Pseudomonas sp. TKP, U771_28915

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psk03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 436 506 -
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 102 1.8E-36
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 648 0.0
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 513 642 8.6E-31
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 5.5E-42
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 113 242 2.1E-49
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 110 242 1.1E-49
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 261 327 3.3E-16
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 371 427 7.0E-20
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 517 633 7.1E-25
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 3.3E-34
SMART SM00493 toprim5 IPR006171 TOPRIM domain 261 332 1.5E-19
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 419 0.0
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 1.4E-40
Gene3D G3DSA:3.40.1360.10 - - - 243 370 1.1E-40
PANTHER PTHR30313 DNA PRIMASE - - 1 647 0.0
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 101 4.59E-38
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 643 29.87747
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 261 342 1.80211E-34
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 502 651 2.8E-33
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 126 253 7.0E-44
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 243 370 1.7E-52
MobiDBLite mobidb-lite consensus disorder prediction - - 478 504 -
SUPERFAMILY SSF56731 DNA primase core - - 116 427 7.06E-109
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 513 639 5.36E-31
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 373 425 1.4E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.