Strain | Pseudomonas putida H8234, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
AACGCGGCGATCCAGGCTTCGCTGGCCGGTGAGGCCGGCCGTGGGTTTGCCGTGGTCGCCGACGAAGTGCAGCGCCTGGCCGAACGCTCATCATCGGCTA CCCGCCAGATAGAGGCGCTGGTGCGCACCATCCAGGCCGACACCAACGAGGCCGTCATCTCCATGGAGCAGACCACCGCCGAAGTGGTGCGCGGCGCCCG CCTGGCCCAGGATGCCGGCGTGGCGCTGGCCGAAATCGAAGGCGTATCGCAGAACCTGGCCGACCTGATCCACAGCATCTCCGACGCTGCCCAGTTGCAG ACCTCGTCGGCCGGGCAGATCTCACACACCATGGCGGTCATCCAGCAGATTACCGCGCAGACCTCCGCCGGCTCCGGGGCCACTGCCGACAGCATCCGCC ACCTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGGTGTCCGGCTTCACCCTGCCGCCACCTGCCGAGCCCAAGTGAAGCGCCGCGTTGAGGAAGTGACA
|
|
DNA Sequence for Gene |
>L483_30095
ATGGCATCTGTTGCTGTAAGCCCCGAGCGCCACGACACGGTGGCGCTGGCCTGGACCAAGGCTGCCATCCTCGACTGCCTGGGCCAGGCGCGTCAGGCGC TGGAGCGTTTCGCCGGCGAGCCAGGCGACCTGTCGATACTCGCCTTTGTGGTCGACAACCTGCACCAGGTGCATGGCTGCCTGCGCATGCTCGAGCTGCG AGGTGCGACGCGTCTGGCCGAAGAACTGGAGCTGTTCGCCAAGGCCATGGCCGACGGCCAGGTGAGCCCACGGGGTGATTGCCTGGGTGCGCTGTTCCGG GGCCTGGAGCAGTTGCCCTCATACCTTGAGCGCTTGCGCGGTGCCCGCCACGACCTGCCATTGGTGATGCTGCCGCTGCTCAACCAGCTGCGCGCCTGCC GTGGCATCGAGCCGCTGGCCCAGGCCAGCCTGATCAGCGGTGCTGCGCAGCGCTTTGCCGGCTCTGACGACCTGGCCAACCTCGACCTCTCGCTGGGCAG CTGGCGCGAACAGTTGCAGGCCGGGCCGGGCCGCGATGCCCTGCGCTCGGTGGTGACCGCACTGTGTGACGACCTTATGCGCATCAAGGAGCGCCTGGAC CAGTTCGTGCGCAGCGACCGCCAGCACAGCGAGCAGCTTGATGCCCTGCTGGCGCCGCTGCGCCACGTGGCTGATACGCTGGCTGTACTGGGCTTCCAGC AACCACGGCGGGTGATCATCGACCAGGTGTTGGCGCTGCAGGCCCTGGCTCAGGGCGAACGAGCCGTGGACGACGCGGTGTTGATGGATGTAGCGGGCGC CTTGTTGTATGTGGAAGCCTCCCTGAATGGCATGGTCGGCCCACTGGAGGAAAACGGCCAGGCCGGCCTGCCAGGCTCGGACCTGGCCGAGATACGCCAG CTGGTGCTGAACGAATCGCTGAACGTGTTGCAGCAGGCCAAGGACCTGATCGGTGACTATGTGGAGTCCGACTGGCCCCGGCAGCGCCTGCAGCCCTTGC CAGGGCTGTTGCAGCAGGTTCGCGGGGCCTTGGCCATGTTGATGCTGCCCGCCGTGGCCGAGCTGCTTGCCGGCTGCGCAAGCTATGTGCAGCGTTGGTT GCAGCACCTGGAGGAGGAGCCGCCTGCCGACGAGCTGACCCACCTGGCCGAGGCCCTCAGCGCCGCTGAATGCTACCTGCAGTGGCGGGTGGCCGACCCG CTGGCGGATGGCCAGCCGTTCATCGACATGGCGTGTGCCAGCCTGGCGGCGTTGGGTGTGCACTGTGCGCAGGCGGATGCCCGAGCGGGCCTGGATGCCA ATGGCGATGGCATCGATGACGAACTGCGCGAGGTGTTTCTCGAGGAAGTGGGCGAGTTGCTGCCGGAAATCGAGCGCCACTGGCTGCGCTGGCGTGCCGA TAACCAGCAGCGCGGGGCGCTGGGGGAAGTGCGCCGTGCGCTGCATACCCTCAAAGGCAGTGGCCGCATGGTGCATGCCGAGGCGGTGGCCGAACTTGCC TGGGGCGCCGAGCACCTGCTGAACCGGGTGCTGGAGGGCCGCAGCGCGCTCAGCCCGGAAGGCGTGGTGGCCCTGCAACAGGTGTTCGTCCATTTGCCCG ATCTGCTGGCGGACTTTGCCACCGGCCAGCTGCCGCAATTGACCGAAATCGAACAACTGGCCGGGCACCTGCATGCCCTGGCTGAAAACGATGCACCGGC GGCCAGTATCGATGGCCTTGAGCCACAGTTGCTGGATATCTTCCGCAGTGAGGCGCAGGGCCACCTGGCCAGCCTTGATGATTTCCTGCAGGGCGCCGAC GGCCACGACACGCCGGTCAGCGATGGCCTGCAACGTGCCCTGCACACGCTCAAGGGCAGTGCCGCCATGGCCGGGGTGATGCCGATCGCTGAGCTGGCCA CCGCCTTCGACCGCCTAGCCCGTGAATACAAGGGCCATCAGTTGCCACTGCAAATGGCCGAGATCGAATGGCTGGAAGCCGCGCGCTCGCTGTTCCATCT GGGCCTGGCGCAACTCGACAGCACACCACTGGCCGCCATCCCTGGCGCCGCGGAGCTGATCGAAGCGGTTGGCCAGGCAGTCGATAGCCGCCTGGCCAGC GGGCATGACGACCCGCAGCATGCCCGGCGTAGCAAGCGCGACCCGCAGCTGGTTGCCAGTTTTCTGGCCCAGGCCATGGACATTCTGCTTGATGCCGAGT CGTTGTTGTCGCGCTGGCAGCAACAGCCCGGCCAGCGCGACGCGCTGGATACCCTGCTCGACCAGATGACCAGCCTGGGCCATGCCGCGCACCTGGCCGA CTTGTGGCAGATGGATGACGTGTGCGAGGCCTTGCTCGATCTGTATGGCGCCGTGGAAGAGGGCAGCCTGCCAGCCGATGCACGCTTTTTCGCCCACACG CAGCGGGCCCATGAGGCACTGCTGGACATGCTCGACGAAGTAGCGGCGGGGCAGGACATCGTGTCACGCCCGGAACTGGTCGATGGCCTGCGCACGCTGC TGGACCAGGCATTGGCACCGGATGCCACCGGCCTGGTGGGCATCGACAAGGTGACACCGCTGCACCCGGACATGGACCTGAGCGGTACTTTGGGGCTGTC GCATGACCCTTCGCTGCCAGAGGTGGGTGAGCCACTGCCAGACGAGCCGGAAAGCCCAGGCGAAGAGTTGCTGGAAGTGTTCCTCGAAGAAAGCTCGGAC ATTGTCGAGAGCGCCGCTGCCGCCCTGGCGCGCTGGCAGGCCGACCCGCGTAGCAGCGTCGAGGTGGACAACCTGATGCGCGACCTGCACACCCTGAAGG GTGTGGCGCGCATGGTTGAAATTGCCCCCATCGGTGACCTGGCACACGAACTGGAATTTCTGTACGAGCTGCTGGCTGCCGGGCGTTTGCCGCCGAGCCC GCCACTGTTCGCGCTGTTGCAGAATTGCCATGATCGCCTGGCGCACATGCTGGATGCCGTACGCCTGGGGCAGCCGTTGCATGCGGCCACGGCACTGATC GACTATATCCGTAACTTCAGCAGCGCGGCCCTGACCGACAGTGCGGCCGGCCAAGGGCCTGTCGAGGCAGCCGCCAGCGAGTTGCCGGCGGCAGCGCCAG AGCGGGCCGCAGGCGACATGGTCAAGGTTGATGCCGAGTTGCTCGATGACCTGGGCAACCTGGCTGGCGAACACTCGATCATTCGTGGGCGCATCGAACA GCAGGTCAACGATGCGCAGTTCGCCCTCAACGAGATGGAAACCACCCTGGAGCGCATGCGCGACCAGTTGCTGCGCCTGGATAACGAGACCCAGGGGCGG ATCTCCAGCCGGCAGCCGTTCGAAGGCGATGCCTACGACGACTTCGATCCCCTGGAAATGGACCGCCATTCGCAGTTGCAGCAATTGTCGCGGGCCTTGT TCGAGTCTGCCTCGGACTTGCTCGACCTGAAGGAAACCCTGGCCCAACGCGCCCAGGAGGCCTACAGCCTTCTGCAGCAGCAGGCCAGGGTGAACAGCCA GTTGCAGGAAGGCCTGACCGCCACGTTGATGGTGCCCTTCGAACGCCTGGTGCCACGCCTGCAGCGTGTGGTGCGGCAGGTGGCCAGCGAACTGGGCAAG CAGGTGGAACTGGTGGTCGGCAACGCCGAGGGCGAACTGGACCGCAGTGTGCTCGAGCGCATGGTCGCACCGCTGGAGCACATGCTGCGCAACGCTGTCG ACCATGGCCTGGAAAGCCGCGAAGCACGGCTGGCCGCTGGCAAGCCGGAGCAGGGCACCATCCACCTGAATTTGCTGCACGAAGGTGCCGATATCGTTAT CGAAATGACTGACGACGGTGCCGGTGTGCCACTCGACGCGGTACGGCGCAAGGCCATCAAGCGCGGCCTGCTGGATCCGCACGCAGACTTGAGCGATCAC GAGATCCTGCAGTTCATCCTGCGCCCGGGGTTTTCCACCGCCGAGAAGATCACCCAGATTTCCGGGCGCGGTCTGGGCATGGACGTGGTGCACGAGGAGG TCAAGCAGCTCGGTGGCTCGATGAGCATCGAGTCGGCCCAGGGCAAGGGTGCACGCTTCTTGATCCGGCTGCCGTTCACCGTATCGATCAACCGTGCGCT GATGGTGCACCTGGGCGAAGAGCAGTACGCCATCCCGCTCAATACCATCGAGGGCATTGTCCGCGTGCCGCCGGCAGAGCTCGCAGCGTGCTATCAGCTG GACACGCCGCGCTATGTCTACGGCGGCCACGAATACGAGCTGCGTTACCTGGGCGAGTTGCTGCAAGGTGTGCCGCGCCCCGCGCTGCTGGGGCAGAGCG TGCCGTTGCCAGTGCTGCTGGTGCATTCCAAGGAGCAGTCGTTCGCCATCCAGGCCGACAGCCTGTCGCCCAGCCGCGAGATCGTGGTGAAGAGCCTGGG GCCACAGTTCGCTGCGGTGGCCGGGTTATCGGGGGCGACATTGCTGGGTGACGGGCGGGTCGTGCTGATTCTCGACCTGCTCGGCCAGCTGCGCGGCCAG CAGCGGCGCCTGGCACGTTTGCCCGGTGGCGAAGCCCAGCGCCAACTGCTCGGCCCGGCGCCGCGGCGTGCGTTGCTGGTGATGGTGGTGGATGACTCGG TGACCGTGCGCAAAGTCACCAGCCGCCTGCTGGAACGCCACGGCATGAGCGTGCTGACGGCCAAGGACGGGGTTGATGCCATGGCCCTGCTGGAAGACCA CCGCCCCGACGTGTTGCTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATTCGCCGTGACGAGCGGCTGAAAGACCTGCCC ATCATCATGATCACCTCGCGCACCGGGCAGAAGCACCGCGACCGTGCCATGGCCATCGGCGTCAACGAATACCTGGGCAAACCGTACCAGGAGTCGCTGC TGTTGCAGAGTATCGCCCATTGGAGCCAGCCCCATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ACTGATTTCCGGCCAGCGCAGCAGCCTGACCGGGCTGTTGCTGCCTTTGGGTGATCGCACCCTGGTGCTGCCCAACGTGGCGGTGGCTGAGTTGAGCGGG CAGCGCAACCTGGTGTGCCAGCCTGGCGACCCCGCCTGGCACCTGGGCTGGATCGACTGGCGGCAGCAGCGCCTGCCGCTGATCGGCTTCGAGGCGGCGT GTGGGGGTGAAACCCCGTGCGGTGAGCGGGCCCGGGTGGTCGTGCTCAACGCACTGGGTGATACCGGCCTGCGCTACCTGGCGCTGTTGCTGCAAGACAT CCCGCGCTCGTGCAAGCTCGACAGCCAGCTGAACTACGTGGACGTGGCGCTGGGCAGGCTGGAGCTGGCGGCGGTGCAGGTGGGCGAGCAGGTGGCTCGG GTGCCGGACCTGGTTGCACTGGAAAGGCTGGTGCGTGACGCGGATCTGCAACCTGACCTTGGCTAGGATGATGCTTGTGCGGGCCTCTTCGCGGGCATGC
|
|
Amino Acid Sequence |
>chemotaxis protein CheY
MASVAVSPERHDTVALAWTKAAILDCLGQARQALERFAGEPGDLSILAFVVDNLHQVHGCLRMLELRGATRLAEELELFAKAMADGQVSPRGDCLGALFR GLEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGIEPLAQASLISGAAQRFAGSDDLANLDLSLGSWREQLQAGPGRDALRSVVTALCDDLMRIKERLD QFVRSDRQHSEQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVDDAVLMDVAGALLYVEASLNGMVGPLEENGQAGLPGSDLAEIRQ LVLNESLNVLQQAKDLIGDYVESDWPRQRLQPLPGLLQQVRGALAMLMLPAVAELLAGCASYVQRWLQHLEEEPPADELTHLAEALSAAECYLQWRVADP LADGQPFIDMACASLAALGVHCAQADARAGLDANGDGIDDELREVFLEEVGELLPEIERHWLRWRADNQQRGALGEVRRALHTLKGSGRMVHAEAVAELA WGAEHLLNRVLEGRSALSPEGVVALQQVFVHLPDLLADFATGQLPQLTEIEQLAGHLHALAENDAPAASIDGLEPQLLDIFRSEAQGHLASLDDFLQGAD GHDTPVSDGLQRALHTLKGSAAMAGVMPIAELATAFDRLAREYKGHQLPLQMAEIEWLEAARSLFHLGLAQLDSTPLAAIPGAAELIEAVGQAVDSRLAS GHDDPQHARRSKRDPQLVASFLAQAMDILLDAESLLSRWQQQPGQRDALDTLLDQMTSLGHAAHLADLWQMDDVCEALLDLYGAVEEGSLPADARFFAHT QRAHEALLDMLDEVAAGQDIVSRPELVDGLRTLLDQALAPDATGLVGIDKVTPLHPDMDLSGTLGLSHDPSLPEVGEPLPDEPESPGEELLEVFLEESSD IVESAAAALARWQADPRSSVEVDNLMRDLHTLKGVARMVEIAPIGDLAHELEFLYELLAAGRLPPSPPLFALLQNCHDRLAHMLDAVRLGQPLHAATALI DYIRNFSSAALTDSAAGQGPVEAAASELPAAAPERAAGDMVKVDAELLDDLGNLAGEHSIIRGRIEQQVNDAQFALNEMETTLERMRDQLLRLDNETQGR ISSRQPFEGDAYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASELGK QVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESREARLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVPLDAVRRKAIKRGLLDPHADLSDH EILQFILRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAELAACYQL DTPRYVYGGHEYELRYLGELLQGVPRPALLGQSVPLPVLLVHSKEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQLRGQ QRRLARLPGGEAQRQLLGPAPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEDHRPDVLLLDIEMPRMDGFEVATRIRRDERLKDLP IIMITSRTGQKHRDRAMAIGVNEYLGKPYQESLLLQSIAHWSQPHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|