Strain | Pseudomonas aeruginosa BWHPSA015 genomic scaffold adggh-supercont1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACGTACCCAGCTTCACCCCGGTGGACGCCGTTTCCTGATATCCGGCCGCATGGCCGTTGATGCTTATTTCGTGATGGGGATCCCATGGCTCGTATTTTGA TTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCAGGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGC CCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCGTCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAG ACCAGCGCCATCCCGGTGATCATCGTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGG TGGACGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGAGCCCGTCGCAGCGCATCGCTCACCCTGACCCCGGAAAGACCAGGCCCCGC
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DNA Sequence for Gene |
>Q028_02746
ATGTCGGACGTTCAGACCCCCTTCCAGCTCCTCGTCGACATCGATCAGCGCTGCCGACGCCTGGCCGCCGGCCTGCCGGCCCAGCAGGAGGCGGTGCAGA GCTGGAGCGGGATCGGCTTCCGCATGGGCGGGCGGTTCTTCGTCGCCCCCATGGGGGAGGTCGGCGAAGTCCTGCACGAACCGCGCTACACCCAGCTGCC GGGCGTGAAGACCTGGGTCAAGGGGGTGGCCAACGTACGTGGCCGCCTGCTGCCGATCATGGACCTCTGCGGTTTCCTCGGCACCGAACTGTCGCCCTTG CGCAAGCAGCGGCGGGTGCTGGTGGTGGAGCACCTGGACGTGTTCGCCGGCCTCATCGTCGATGAGGTGTTCGGCATGCAGCACTTCCCGGTGGACACCT TCAGCGAACAGCTGCCGCCACTAGAAGCGGCACTGCAACCCTTCATTCATGGCGTCTTCCATCGAGAGCAGCCGTGGCTGGTGTTCAGCCCGCATGCGCT GGCGCAACACCAGGGCTTCCTCGACGTCGCCGTATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACAGCTTCACCGGTTGGGCCGGTCTGCCGGCCCGTGTCGTGACATGGAAATCGTAATCGTGGTCGGTCCGGGCGGGGGCCAAATATGAAGAAAATCAACG CAGGCAATCTTTTCGCGGGCATGCGCAGCAGCTCGGTGATCGCGGGGCTGTTCATCGTCCTCATCGTCTCGATCGTGTTGCTGTTCGCCAACTTTGCCTA CCTCAACACCCAGTCGAACCATGACAAGCAGTACATCGGCCATGCCGGCGAACTGCGCGTCCTGTCGCAGCGGATCGCGAAGAACGCCACCGAAGCGGCG GCGGGCAAGGGCGAGGCGTTCAAGCTCCTGAAGGATGCGCGCAACGACTTCGAGAAACGCTGGAACATCCTGGTCAACGGCGACGAGAGCACATCCCTGC CGCCCAGTCCCGAAGCGGTGAAGCCGCAGATGGACGTGGTGCAGCAGGACTGGGATGGCCTGCGCAAGAACGCCGACTCCATCCTCGCCAGCGAACAGAC
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Amino Acid Sequence |
>protein PilI
MSDVQTPFQLLVDIDQRCRRLAAGLPAQQEAVQSWSGIGFRMGGRFFVAPMGEVGEVLHEPRYTQLPGVKTWVKGVANVRGRLLPIMDLCGFLGTELSPL RKQRRVLVVEHLDVFAGLIVDEVFGMQHFPVDTFSEQLPPLEAALQPFIHGVFHREQPWLVFSPHALAQHQGFLDVAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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