Pseudomonas aeruginosa PAO1, PA4316 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 207 470 1.9E-97
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 477 0.0
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 6 198 3.9E-4
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 7 453 2.15E-124
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 5 196 1.5E-92
Gene3D G3DSA:1.10.287.1240 - - - 416 473 2.7E-5
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 6 430 1.5E-17
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 209 347 4.2E-52
CDD cd06138 ExoI_N - - 8 190 5.66204E-107
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 209 348 1.1E-48
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 354 413 3.8E-25
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 9 188 5.7E-25
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 354 414 2.5E-26
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 5 196 6.7E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.