Pseudomonas aeruginosa PAO1, PA1092 (fliC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGAGGCGATCCGCGCGCACCTGGCCGATGCAGACGCCAACGCCGCGGCCGGCGCGCAGTTGCGCGAGGCGGTGCGCCGCGACTGGATGCTCGAAGGCGC GCATCTCGAGGCATGGGCGGCAGCCTGGCTGCCGGACTGAATCCGGGTTTTTCTCGAACGAGGCCGGTGGCGCAAGCCATCGGCCTTTTTTCATGCCCGG CGTGCCCTGTTGCACGGGAGGGCTAAAGAAAATCGCCGGGGGGTCGATGCAATGGGTGTCGGAACTTCCACCCTCTGCCGGACCAACCGGGGGCGGTTCA GGACCGATATTGGCGAGTCCTCTTCGAAGCATGTAACCCACTGAAGAGGAAGAGAAAAAGAAAATGTTGATTTTTTCTCTAAAGCTCCGCCGGGAAACGC CGATAAACACCATGAACGCGAATTCTTGGGGCACCTGAGCAAGCAGGCCGAGAGATCGCAAGCTCAGGTAACCGAAATAGGTCCTTTGGAGGAAATCACC
|
|
| DNA Sequence for Gene |
>PA1092
|fliC
ATGGCCCTTACAGTCAACACGAACATTGCTTCCCTGAACACTCAGCGCAACCTGAATGCTTCTTCCAACGACCTCAACACCTCGTTGCAGCGTCTGACCA CCGGCTACCGCATCAACAGTGCCAAGGACGATGCTGCCGGCCTGCAGATCTCCAACCGCCTGTCCAACCAGATCAGCGGTCTGAACGTTGCCACCCGCAA CGCCAACGACGGCATCTCCCTGGCGCAGACCGCTGAAGGTGCCCTGCAGCAGTCCACCAATATCCTGCAGCGTATCCGCGACCTGGCCCTGCAATCCGCC AACGGCTCCAACAGCGACGCCGACCGTGCCGCCCTGCAGAAAGAAGTCGCTGCGCAACAGGCCGAACTGACCCGTATCTCCGATACCACCACCTTCGGTG GCCGCAAGCTGCTCGACGGCTCCTTCGGCACCACCAGCTTCCAGGTCGGTTCCAACGCCTACGAGACCATTGACATCAGCCTGCAGAATGCCTCTGCCAG CGCCATCGGTTCTTACCAGGTCGGCAGCAACGGCGCGGGTACCGTCGCCAGCGTAGCGGGCACCGCGACCGCTTCGGGCATCGCCTCGGGCACCGTCAAC CTGGTCGGTGGCGGTCAGGTGAAGAACATCGCCATCGCCGCCGGCGATAGCGCCAAGGCCATCGCCGAGAAGATGGACGGTGCGATCCCGAACCTGTCGG CTCGTGCCCGTACCGTGTTCACCGCTGATGTCAGCGGCGTGACCGGTGGTTCGCTGAACTTCGACGTAACCGTTGGCAGCAACACCGTGAGCCTGGCAGG CGTGACCTCCACTCAGGATCTGGCCGACCAACTGAACTCCAACTCGTCGAAGCTGGGCATCACTGCCAGCATCAACGACAAGGGTGTACTGACCATCACC TCCGCTACCGGCGAGAACGTCAAGTTCGGTGCGCAGACCGGTACCGCTACTGCCGGTCAGGTCGCAGTGAAGGTCCAGGGTTCCGACGGCAAGTTCGAAG CGGCCGCCAAGAACGTGGTAGCTGCCGGTACTGCCGCTACCACCACCATCGTGACCGGCTACGTGCAACTGAACTCGCCGACCGCCTACTCGGTCAGCGG TACCGGCACCCAGGCTTCGCAGGTCTTCGGCAACGCCAGCGCCGCGCAGAAGAGCAGCGTTGCCAGCGTCGACATCTCCACTGCCGACGGCGCCCAGAAC GCCATCGCGGTAGTCGATAACGCCCTGGCTGCGATCGACGCCCAGCGTGCTGACCTCGGTGCTGTTCAGAACCGCTTCAAGAACACTATCGACAACCTGA CCAACATCTCGGAAAACGCTACCAACGCTCGTAGCCGCATCAAGGACACCGACTTCGCTGCCGAAACCGCGGCGCTGTCGAAGAACCAGGTGCTGCAACA GGCCGGTACCGCGATCCTGGCCCAGGCCAACCAGCTGCCGCAGGCGGTCCTGAGCCTGCTGCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCGGGAACGGTCACTCACGCGGTACTGGGAGGAAGGGGTGACCCTTCCTCCCTTTTCCCTTTGCGAGGCATGAGAAATGGACGTCGGAAATATCACTT CCCTTTCTACGTTCAAGACCGGCAGGGCCCCGGAGGCCAGCGGCGATATCTTTGCGCCGCGCAGCGCAGCGGATGGCAGCGGCAAACCGTTGCCGGAAGT GACGGCTTCCCGGGAGGCCAGCGAATCTCGCGATGACCTGGGGCTCGCCGTCAGCGACATCCAGTCTTTCGTGCAGAGCGTCAAGCGCAACTTGAACTTC AGCATCGACGACTCCTCTGGCCAGGTCGTGGTCAAGGTGATCGACGGTGACTCGGGCGAAGTCGTGCGGCAAATCCCTTCCGAAGAAGTACTAAAACTTG CCGCCCGGCTCGACGACGTACACAGTGTCCTGTTCGAAACCCGCGCCTGACGCGCGGGTTGAACGACTTGGCATGGTGCTTGCCCTATCGAAGGGATAGG
|
|
| Amino Acid Sequence |
>flagellin type B
MALTVNTNIASLNTQRNLNASSNDLNTSLQRLTTGYRINSAKDDAAGLQISNRLSNQISGLNVATRNANDGISLAQTAEGALQQSTNILQRIRDLALQSA NGSNSDADRAALQKEVAAQQAELTRISDTTTFGGRKLLDGSFGTTSFQVGSNAYETIDISLQNASASAIGSYQVGSNGAGTVASVAGTATASGIASGTVN LVGGGQVKNIAIAAGDSAKAIAEKMDGAIPNLSARARTVFTADVSGVTGGSLNFDVTVGSNTVSLAGVTSTQDLADQLNSNSSKLGITASINDKGVLTIT SATGENVKFGAQTGTATAGQVAVKVQGSDGKFEAAAKNVVAAGTAATTTIVTGYVQLNSPTAYSVSGTGTQASQVFGNASAAQKSSVASVDISTADGAQN AIAVVDNALAAIDAQRADLGAVQNRFKNTIDNLTNISENATNARSRIKDTDFAAETAALSKNQVLQQAGTAILAQANQLPQAVLSLLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|