Pseudomonas sp. MOIL14HWK12:I1, PSEK12I1_RS0119710
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I1 PseK12I1DRAFT_scaffold_2.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTCGATCCCCTGGTGCTCGATGCCTTCCTGGCCATCGAACCGCAGATCTGCGCCATCGCCCAGCGCTTTCACGATGAAGGGGTGGGAGGGACCCGGCG TCTGGTTTGAATCCGTCCCCCTTCCTGCCGCCTCGCTCCTCGATTCCTGGTGCCTTCTCCCTCTCGCCGGCATCCAGCTCGTCATCCGGCTGGTTTGCCT ACCGCTGCACAAGGCGGAGAGGGCAGCCGCTCATTTCTTGAAACATTCCCGAGAAAATCGCCGAATCAGAGCGATGGAAGGCTGACGTCTGGAAAGCTCC GTCCTTGACGGCTTCGCGCGGGCAAAGCATAAGTTTGCGGTCGCTTATGATATTAATTTGCATTTACAGATGCATCCAGGTTGCATAGCCTGCGTTCCGC CGCGCAAGACGGCATCGGATACCGGTCCCTGGAAAATCTCCAGCGAGTCCTTACGTGGGGTACGGACGGGTCGGTGTTTCCCTAGAGGACGACCAACGAC
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| DNA Sequence for Gene |
>PSEK12I1_RS0119710
ATGCAGCTCTTCTCCCTTCGCCTCATCGCGCTTTCCGTCTCCATGGGCGTGGCGACCCTCGCCCAGGCCGCTCCCGTGGCGTTGTCGCAACCGGCGCAGC CGCTGGCCGATGCCTTGCAGAGCTTCGCGCGCGCCAGTGGCCTCCAGGTGAACTACGATCCCGCCGCCCTGGTGGGCAAGCGGGCACCGGCACTGGCGGG GCGGATGGAGCCGGATGTCGCCTTGCAGCGCCTGCTGGCGGGCAGCGGCCTGGCGGCCTCGGTCAGCGGCTCGGTCGCGACCGTCGCCCCGGTGGCCACC CAGGCCGCTGCCGGCAGCGTGGCCCTGGATGCCACCACCATCAGCGCGGACGATGGCTCCCTGACGGGTCGGACGACCACCGAAGGGACCCGCTCCTACA CCACCGGCGCCATGAGCACCTCCACCGGCCTGCCGCTGTCCATCCGCGAAACGCCCCAGTCGGTGAGCGTCATCACCCGGCAGCGCATGGAAGACCAGGG CATGACCGATCTCAACGATGTGGTCCGCTACGCCCCGGGCGTGACGCTGAACAAGTTCGGCGGCGACCGCCAGGAATTCCTCTCCCGCGGCTTCCGCATC GACAATATCATGTACGACGGCCTACCCACCACGGCCGGGACCTTCACCCTCGACACCTTGTCCTCGGCCGACCTGTCCATCTACGACCGGGTGGAAGTGG TGCGTGGCGCCACCGGCCTGATGACCGGCGCCGGCGATCCTTCGGCCACCCTCAATCTGGTGCGCAAGCGCCCGACCGCCTTCCCCCAGGTCAGCGTCAC CACCAGCGCCGGCAGCTGGGACCGCTACCGTACCGAGGTCGACGCCTCCAACAAGCTCAACGAAGCCGGCACCCTGCGCGGTCGCGCCGTGGCCGCCTAC GAAGACGGCAACAGCTTCCAGGACGTGCGCGAGCGCAAGCGCCAGACCTTCTATGGCGTCCTCGAAGCGGATCTCAGCGACGCCACCACCTGGACCATCG GCGCGTCCAAGCAGCGTGAAGACAAGACCTCCGACTGGGGCAGCCTGCCCAGCGGCCCCAACGGCGAGAACCTGCACCTGTCGCGTTCCACCTTCCTGAG CGGCGACTGGGCCTACTGGGATCAGGACAACTACACCCTGTTCTCCGACATCACCCACACCTTCGACAACGGCTGGAAAGCCAAGCTGGCGGCGCAGCAG GTCTGGGCGAATTCGGATACCTATTCCAACTACCTGACGTCGACGGCCGCGGACTTCAGCTACAGTTCGGTCAGTGACTTTGGTACCGCTTCCGGCGCCT ATCGCACCGATTCCGATCAGCTCAACATCGATGCCTCGGTCAGTGGTCCCTTCCAGTTGATGGGTCGCGAGCACGAACTGATGGCCGGGATCAGTCGGCG GCAGGATAAGTTCTATCAGCGTGGCGGCTATTCCGGTGCCACTCCGGTGGACATCTACAACTTCCGTCCCAGCAGCATCCCCAAACCGGCCAAGGACACG CTGACGCCCTATGCCAGCAAGAACACCACGACCGAAGAGGCGATCTACGCGGCGGCGCGCTTCAACCCCATAGATCCGCTGCACGTCATCGTCGGGGGAC GAGTCAGCTGGTATGACTTCGACAACCTTTACAGCGACAACGACTACAAGGCCACCCGCGAAGTCACGCCCTATGCCGGCATCATCTACGACCTGAACGA CACCTATTCGGTCTATGCCAGCTATACCGAGATCTTCAAGCCGCAAAGCGAGCAGAACTCCGGAGGTTCGGTCCTGGAGCCCATGACTGGCAAAAGCTAC GAGATCGGTCTCAAGGGCGCCTATTTCGATGGCGCGCTGAACGCGTCCGTGGCGCTGTTCGACACCATTCAGGAGAATCGTGCCTACCTGCCAGCCAACC AGGCCACCTTCTGCCCTGGCTATCCCGCGCAGAGCTGCTACAGCGCGGCGGGCGAGGTCCGCAGTCGCGGTATCGACGCGGAAATCTCCGGCCAACTGAC GCCAAACTGGCAGGCGTCTGCGGCCTATACCCTGGTGCTTAGCCAATACACCAAGGATGTCACCTACGAGGATCGCCGCTTCGCGCCCGAGCAGCCCAAG CACCTGTTCAAGGCCGCCACCAGTTATCAACTCACGGGTAGCCTGAGCAACTGGCGTATCGGTGGCGATCTGCAGGCCCAAAGCGAGACCTTCCAGCGCG TCGGTACCGGCGAAGCCAAGCAGGATAGCTATGCCCTGGTGGGGCTGATGGCCGGCTACCGCTTCAACGAGCATTGGGATGGCCGGGTCAACTTCAACAA CATCTTCGATGAGAAATACTGGCAGGGCATCCCGACAGGTACCGGGAGTGGCACCTACGGCGATCCCCGCAACGTCATGCTCAGCCTGAAGTGGACGCTG TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGCGCGTGACGCCTGCGCTTCGCCCTTGTCCGGACCCCCGGACCTGGGCGAAGCTGCGGACTTCCGCCAAGGAGTGCCGCCCATGTCCAGTTCCACCG TCCACCTGGAACGCTATGCCGACCGCCATGCCGAGGGCCTCGCTGCCCTCTATGGCGATCCGGCCGTGGCGCGGCAGGTGCTGCAGCTACCCTATCAGAG CGCCGAACAATGGCGGCAGCGTCTGAGCGGCGAACGCGAAGGGCGGATAGGACTGGTCGCCCTGCAGCAGGGGCGGGTGGTGGGCAGCGCCAGTCTCGAA CAGCAGCAACGCATTCGCCGCCAGCACTGTGGCGCCCTCGGCATGGGCGTGGCCCGGGATTGCCAGGGGCAGGGCATAGGCACCCAGCTGCTGACGGCCC TGCTCGACCTCGCCGACAACTGGATGAATCTGCAAAGGGTCGAGTTGACCGTCTTCAGCGACAACGAGCCGGCCCTGGCGCTCTATCGCAAGCTGGGTTT
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| Amino Acid Sequence |
>ligand-gated channel
MQLFSLRLIALSVSMGVATLAQAAPVALSQPAQPLADALQSFARASGLQVNYDPAALVGKRAPALAGRMEPDVALQRLLAGSGLAASVSGSVATVAPVAT QAAAGSVALDATTISADDGSLTGRTTTEGTRSYTTGAMSTSTGLPLSIRETPQSVSVITRQRMEDQGMTDLNDVVRYAPGVTLNKFGGDRQEFLSRGFRI DNIMYDGLPTTAGTFTLDTLSSADLSIYDRVEVVRGATGLMTGAGDPSATLNLVRKRPTAFPQVSVTTSAGSWDRYRTEVDASNKLNEAGTLRGRAVAAY EDGNSFQDVRERKRQTFYGVLEADLSDATTWTIGASKQREDKTSDWGSLPSGPNGENLHLSRSTFLSGDWAYWDQDNYTLFSDITHTFDNGWKAKLAAQQ VWANSDTYSNYLTSTAADFSYSSVSDFGTASGAYRTDSDQLNIDASVSGPFQLMGREHELMAGISRRQDKFYQRGGYSGATPVDIYNFRPSSIPKPAKDT LTPYASKNTTTEEAIYAAARFNPIDPLHVIVGGRVSWYDFDNLYSDNDYKATREVTPYAGIIYDLNDTYSVYASYTEIFKPQSEQNSGGSVLEPMTGKSY EIGLKGAYFDGALNASVALFDTIQENRAYLPANQATFCPGYPAQSCYSAAGEVRSRGIDAEISGQLTPNWQASAAYTLVLSQYTKDVTYEDRRFAPEQPK HLFKAATSYQLTGSLSNWRIGGDLQAQSETFQRVGTGEAKQDSYALVGLMAGYRFNEHWDGRVNFNNIFDEKYWQGIPTGTGSGTYGDPRNVMLSLKWTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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