Pseudomonas sp. URMO17WK12:I4, H042_RS0101670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGAATCCTTTTCTACCGCCACGCAGTCATGCAGCAGCACCGCCGCCAGCAGCACCTTTAGATCGCCGCCCTCCTCGCGCTGCAAGCGCCGAACGTTG GCCCACACCCGCTGCAGGTGCGACAGGTCATGGGCGCCATCGTCGATAGACGGCGCACAGCGGGCCAACAGTTGGCCAGCCAGCTCGGCGTAAGGGGCGA AAGGCTCCAGATTCATCGACAGGTCGCCAGAAAGGGAAAGCCGCACCTTACGGGCCAGCCGCCAGGCCTCGCAAGCCATGCGCAGAGTGTGGCGCCTTGC CATTACTGGACAAGCTCATAGCGCTTGCGCCACCTTTGGCAGCTTCGCCGGGCAGCCTGGCCGCGCGCCACGACCACCCCGGCACATAACGATTTTCTCG ACGGCTTCGCCTGCTTGAGCGCACATTCCGAACCGCGTCTCAGCAGATAACCGCGCGCCCGGTTATCGTCGGCACAGGATGGCATCGCAGGGATACGCAC
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| DNA Sequence for Gene |
>H042_RS0101670
ATGGCAATCACACAACAGTCGCGCATGGCCAAGGTCAACAGCCCGCTCGGCGAAAACGCGCTGGTGATGGAGCGCCTGGCCGGTAATGAATCCCTGGGCC GCCTGTTCCACTACGAGCTGAGCCTGGCCTCGGAAAACTCCTCGCTCAAGCTCAACGCCCTGCTCGGCAAGCCCATGGGCCTGGCCGTGCAACTGGCCGA CGGCAGCGACCGCTATTTCCACGGCATCGTCGCGCGCTGCAGCCAGACCGCCCACCGCGGCCAGTTCGCCAGTTACCAAGTCACCCTCAAGCCCTGGTTA TGGTTGCTGTCACGCACCTCCGACTGCCGCATCTTTCAGAGCAAGACGGTGCCGGACATCGTCAAGCAGGTGTTCCGCGACCTGGGTTTTTCGGACTTCG AAGACGCCCTGACCCGCTCCTACCGCGAGTGGGACTATTGCGTGCAGTACCGCGAGACCAGCTTCGATTTCGTCAGCCGGCTGATGGAGCAGGAAGGCAT CTACTACTACTTCCGCCACGAGCAGGAGCGCCATGTGCTGGTGCTCTGCGATGCCTATGGTGCCCACAGCACGGCGCCCGGCTATGGACGCGTACCCTTC TATCCCCTCGACGACCAGATGCGCGAGCGTGACCACATCCACGACTGGCACCTGGCCCACGAGGTGCAGCCCGGCTCCCTGGCGCTCAACGACTACGACT TCCAGCGCCCCAGCGCACGCCTGGAAGTGCGCTCCAGCATCGCCCGCGAGCACGCCAACGCCGACTATCCGCTCTACGACTACCCGGGCGAGTACGTGCA GAGCAAGGACGGCGAGCAGTACGCGCGCAATCGCATCGAGGCGATCCAGGCGCAGTACGAGCAGATCCGCCTGAAGGGCAATGCCCGCGGCCTGGGCAGC GGCCACCTGTTCAGCCTCACCGATTACCCGCGCGACGACCAGAACCGCGAATACCTGATCGTCGATGCCGAATACACCATCACCCAGGACCTCTATGAAA GTGGCCGCGGCAGCGACAGCTTCCAGTTCGACAGCAGCCTGACCTGCATCGACGCCAGCCAGGTGTTCCGCCCGCTGCCGCTGACCGTGCAGCCCATCGT GCAGGGCCCGCAAACGGCCATGGTGGTCGGCCCCAAGGGCGAGGAAATCTGGACCGACCAGTACGGCCGGGTGAAGGTGCACTTCTACTGGGATCGCCAC GACCAGTCCAACGAGAACAGCTCGTGCTGGATTCGCGTGTCGCAGAACTGGGCCGGCAAGAACTGGGGCTCGATCCAGATCCCGCGCATTGGCCAGGAAG TGATCGTCAGCTTTCTGGAAGGCGACCCTGACCGGCCGATCATCACCGGCCGCGTCTACAACGCCGAGCAGACGGTGCCCTACGACCTGCCCGCCAACGC CACGCAAAGCGGCACCAAGAGCCGCTCGAGCAAGGGCGGCACGCCAGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGAAGAGCAGCTGTTC ATCCATGCCGAGAAGAACCAGGACATCGAGGTCGAGAACGACGAGACCCACTGGGTCGGCCACGACCGCACCAAGACCATCGACAACGACGAAACGGTGC ACGTCAAACACGACCGCACCGAGACGGTGGACAACAACGAGACCATCACCATCGGCGTCGACCGTAGCGAAAAGGTCGGCAACAACGAGTCCATCACCAT CGGTGTGAACCGCACCGAAAACGTGGGCAGCAACGAATCGATCAGCATCGGCGCCAACCGCACCGAGAGCGTGGGCAGCGATGAAACCATCAGCATCGGC GCCAACCGCACCGAGAGCGTGGGCAGCAACGAAACCATCAGCATCGGCGCCAACCGCACCGAAAGCGTCGGCAACAACGAGCGCACTACCATCGGTGCCG ACCGCACCGCGCTGATCACTGCCAACGAGTACGTGCTCGTCGGCGCAGACCAGGCGAACATGGTGGGCGGCAACGAGTCGCACTATGTGCGTGGCGAGCG CAACAGCCGCGTCCTCAAGGATGACAATCTGCATGTCGGCAAGAACTTCGTACTCAAGGCCGGCGACTCGATCACCCTGCAGACCGGCGCCGCCAGCATC ACCATGAAGAAGGACGGCACCATCGTCATTCGTGGCAAGAACATCAGCATCGACGGCTCCGGGGCGATCAATGCCAAGGCCGCCAAGAACATCGTGATGA AAGGCCAGAAGATCCTGCAGAACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCGATCAGCGCCAGGAGCCCCCATGACTGTCCAGCACCACCCCCCCACCGCCGCCACTCGCCTGGACGGCGTGGTCATCGGCGTACTGCTCGATGTG CCGCAAGCCGCAAGCCCGGTGGTGGCCTTTGCCGGCTGCCCGTCGGAGACCGGCATCGCCGCGACCACCACCACGGCCCTCAGCCGCGAGGACATCGGCG CCCAGGTGGCCCTGATGTTCGTTGGCGGCGACCCGAGCCAGCCACTGGTGATCGGCCGTATCCAGCGCCTGCCGCAGGCACCGGCGCCTGCCGCCATCGC CCATCTCGACGGCGAGCGCCTGGAATTCAGCGCCGAACGCGAGATCGTGCTGCGCTGCGGCAAGGCCAGCATCACCCTGACCCGCGAGGGCAAGGTGCTG ATCAAGGGCGCCTACCTGTCCAGCCGCTCCAGCGGCGTGAACCGCATCAAGGGCGGTTCGGTGCAGATCAACTAAGAGCCGCCCATGGAACTGCTCAATG
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MAITQQSRMAKVNSPLGENALVMERLAGNESLGRLFHYELSLASENSSLKLNALLGKPMGLAVQLADGSDRYFHGIVARCSQTAHRGQFASYQVTLKPWL WLLSRTSDCRIFQSKTVPDIVKQVFRDLGFSDFEDALTRSYREWDYCVQYRETSFDFVSRLMEQEGIYYYFRHEQERHVLVLCDAYGAHSTAPGYGRVPF YPLDDQMRERDHIHDWHLAHEVQPGSLALNDYDFQRPSARLEVRSSIAREHANADYPLYDYPGEYVQSKDGEQYARNRIEAIQAQYEQIRLKGNARGLGS GHLFSLTDYPRDDQNREYLIVDAEYTITQDLYESGRGSDSFQFDSSLTCIDASQVFRPLPLTVQPIVQGPQTAMVVGPKGEEIWTDQYGRVKVHFYWDRH DQSNENSSCWIRVSQNWAGKNWGSIQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPANATQSGTKSRSSKGGTPANFNEIRMEDKKGEEQLF IHAEKNQDIEVENDETHWVGHDRTKTIDNDETVHVKHDRTETVDNNETITIGVDRSEKVGNNESITIGVNRTENVGSNESISIGANRTESVGSDETISIG ANRTESVGSNETISIGANRTESVGNNERTTIGADRTALITANEYVLVGADQANMVGGNESHYVRGERNSRVLKDDNLHVGKNFVLKAGDSITLQTGAASI TMKKDGTIVIRGKNISIDGSGAINAKAAKNIVMKGQKILQN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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