Pseudomonas sp. URMO17WK12:I4, H042_RS0101670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.50.230 | - | IPR037026 | Vgr protein, OB-fold domain superfamily | 355 | 457 | 5.8E-44 |
| Pfam | PF06715 | Gp5 C-terminal repeat (3 copies) | IPR010609 | Gp5, C-terminal | 601 | 624 | 1.3E-4 |
| Pfam | PF04717 | Type VI secretion system/phage-baseplate injector OB domain | IPR006531 | Gp5/Type VI secretion system Vgr protein, OB-fold domain | 386 | 453 | 3.1E-14 |
| Pfam | PF06715 | Gp5 C-terminal repeat (3 copies) | IPR010609 | Gp5, C-terminal | 530 | 552 | 1.3E-4 |
| Gene3D | G3DSA:3.55.50.10 | - | - | - | 98 | 189 | 0.0 |
| SUPERFAMILY | SSF69349 | Phage fibre proteins | - | - | 442 | 612 | 2.82E-50 |
| SUPERFAMILY | SSF69255 | gp5 N-terminal domain-like | - | - | 365 | 452 | 7.85E-35 |
| NCBIfam | TIGR03361 | JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain | IPR017847 | Type VI secretion system, RhsGE-associated Vgr family subset | 11 | 524 | 0.0 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 12 | 184 | 4.04E-61 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 463 | 485 | - |
| SUPERFAMILY | SSF69349 | Phage fibre proteins | - | - | 581 | 722 | 1.41E-21 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 463 | 483 | - |
| FunFam | G3DSA:2.40.50.230:FF:000001 | Type VI secretion protein VgrG | - | - | 355 | 457 | 1.4E-61 |
| NCBIfam | TIGR01646 | JCVI: type VI secretion system tip protein VgrG | IPR006533 | Type VI secretion system, RhsGE-associated Vgr protein | 22 | 506 | 0.0 |
| FunFam | G3DSA:4.10.220.110:FF:000001 | VgrG1 | - | - | 224 | 286 | 1.6E-30 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 189 | 362 | 5.27E-41 |
| Pfam | PF05954 | Phage tail baseplate hub (GPD) | - | - | 29 | 330 | 8.7E-108 |
| Gene3D | G3DSA:2.30.110.50 | - | - | - | 15 | 333 | 0.0 |
| PANTHER | PTHR32305 | - | - | - | 26 | 705 | 2.7E-98 |
| Gene3D | G3DSA:4.10.220.110 | - | - | - | 224 | 286 | 0.0 |
| Pfam | PF06715 | Gp5 C-terminal repeat (3 copies) | IPR010609 | Gp5, C-terminal | 554 | 576 | 2.9E-4 |
| FunFam | G3DSA:3.55.50.10:FF:000001 | Actin cross-linking toxin VgrG1 | - | - | 98 | 189 | 3.6E-43 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.