Pseudomonas sp. LAMO17WK12:I2, D883_RS0117235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I2 D883DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGAACGTTCGTCGGCGGCCACCCGGCAGATTGAAACCCTGGTGCGCGCGATCCAGGCCGACACCAACGAAGCCGTCATTTCCATGGAGCAGACCACC ACCGAAGTGGTGCGCGGTGCACGGCTGGCCCAGGACGCCGGGGTGGCGCTGGAAGAGATCGAAGGCGTATCGAAAACCCTGGCCGCGCTGATCCAGAGCA TCTCCAACGCGGCGCAGCAACAGACCTCATCGGCGGGGCAGATCTCCCTGACCATGAACGTGATCCAGCAGATCACCACGCAGACGTCATCGGGCTCCAC CGCTACCGCCGAAAGCATCGGCAACTTGGCGAAGATGGCCAGCCAGTTGCGCAGGTCGGTGTCGGGTTTCACCTTGCCTGCGGCCAAACAGGTTGATGAT TGAAATGCGATCCAAATGTGGGAGGGGCTTGCCCCCTCCCACACTAGATCTCCATTGGCTTTGAGATCCAGGCAACCCACGAATTCTAAGCGGAGCAGTT
|
|
| DNA Sequence for Gene |
>D883_RS0117235
ATGGTTGATCGGCACGACTACGTGGCCCTTGAATGGGTCAAGGGCGACATTGCCGAAACCCTGAAGCAGGCCCGTTCGGCGCTGGATGCATTTGTCGAGA CCCACGACGATGGCGTGATCAGCCAGTGCCTGGACGCTATCCACCAGGTGCATGGTGCGCTGCAAATGGTCGAGTTCTACGGCGCGGCGCTGCTGGCCGA AGAGATCGAGGAACTGGCCCTGGCGCTCCAGGCCGGGCATGTCGGCCAGCGCGAGGAAAGTATCCGCCTGCTGCAACAGGCCTTGGGCCAACTGCCGTTG TACCTTGACCGGGTGCACAGCGCTCGCCGTGATTTACCGCTGGTGGTGCTGCCGCTGCTCAACGACCTGCGCAGTGCCCACGGCGAAAGCCTGCTGTCGG AAACCAGCTTGTTCAGCCCGCAACTGCTGTCGATTGCGCCGCTTGCCGAGGACGCCCTGGCCCAACGCGCGCCGGCCGACCTCCAGGCGCAACTGCGCCA GTGGCATCAACTGTTGCAGCAAGCCCTCGCCGGGCTGCTGCGTGAAGACCACGGGCCGAGCAACCTGGAAGACATGGCGCGGGTGTTCGCGCGCCTTGAG GCGCTGTGCCAGGGCGCGCCGCTGTTGCCGCTGTGGCAAGTGGCGTCGGCGCTGGTCGAGGGCATGCTCACCGGCGTGGTCGCCAACAGCCCGGCGCTGC GCAGCCTGCTCAAGGCCAGCGACAAGCAGCTCAAGCGCCTGCTGGCGCAGGGCATCGGCGGGATCAACCAGCCCGCACCGGATGAACTGCTCAAGAGCCT GTTGTTTTACGTCGCCAAAGTCACCCGGCCGACCCCACGCATGCAGAGTCTGAAAGAGCGCTACAGCCTGGATGAGGCCTTGCCCGACAGCGCAGTGGTG GACGCCGAACGCGCGCGCCTTGCCGGGCCGGATCGCAACGCCATGGGCTCGGTGCTCGGTGCGTTGTGCGAAGAATTGGTCCGGGTCAAAGAGCGCCTCG ACCTGTTCGTGCGCAGCGACCGCCAGCACACGAGCGACCTCGACGCGCTGCTGGCTCCCCTGCGACAGATTGCCGATACCCTCGCGGTGCTGGGGTTTGG CCAGCCGCGCAAAGTCATCATCGACCAGCTGGCCGTGGTATTGAGCCTGGCCCAGGGGCATCGCGAGCCCAACGATGCGGTGTTGATGGACGTCGCCGGT GCGTTGCTCTATGTGGAAGCCACGCTGGCGGGAATGGTCGGCACCGTCGAGCCGGAAGGCCACGAAGAAAGCCGCCTGCCCACCACCGACCTGACCCAGA TCCACCAGTTGGTCATCCGCGAATCCTGCCAGTGCCTGCAGCAAGCCAAGGAGCTGGTGATCGACTGTATCGAAGCCGATTGGGACCGCCAGCGCCTGGA ATCCCTGCCGGAACTGCTGAGCCAGGTGCGCGGCGCGCTGGCGATGATCCCCTTGCCCCGCGCGGCCAGCCTGATGCGCGGTTGCACCGATTACGTCGAC GAACAGTTGATGGTCAACGACAGCCCGCCGTCGGAGCTGCAACTGGGGCATTTCGCCGATGTGATCAGCAGCCTGGAGTATTACCTCGAACGCATGCTCC AAGACCCGGACGCCGCCGGTGAACGGGTGTTGGAACTGGCCACCCAAAGCCTGGCTGCGCTGGGCTACCTGCCCGCCGAAAAACCCTGGCGTCAGGCGCT GGCGGCACCCGATGGCGCGCTGTCGAGCGAGGTTGCGCCCAGCCAGTCCCAGTTCGACGCATTGGCCAACCCCACTTCGGGCCTCAATCCGCCAGCCTTG CAACGCCCCGGTAGCCTGCTGCCGCCGCCGGCCGATGAAGCGCCCATCGACGATGAACTGCGCGACGTCTTCCTCGAAGAAACCGAGGAAGTCCTTGAGG TGCTGCACCGTCACCTGCCCAACAGCGCGGACAAAACCGCCCAGGGCGAAATGCGCCGCGCCTTCCACACCCTGAAAGGCAGCGGCCGCATGGTGCGCGC CCTGGTGCTGGCGGAGCTGGCCTGGGCCGTGGAAAACCTGTTGAACCGTGTGCTCGAGCGCAGCGTGGCCCTCGGCCCCGAGATCCAACAGGTGCTGGAT GACGCCGTGGCCCTGCTGCCGGCATTGATCGCCGACTTCGCGACGGGAGAGCAACACCAGCGCGATGAGGTCGACGCCCTGGCCGCCCGCGCCCACGCCT GGGCCAACGGCGCCCCAGCGTCGGTCGGCGAACCCCACGATCCGATGTTGCTGGAGATCTTCCGCAACGAAGCCCAGAGCCATCTGGACAGCCTCAACCA CTTCCTGCAACAGGCCGCCGAGCATGTGCCGCTGCAAGTCAGCGATGAACTGCAACGCGCCCTGCACACCCTCAAGGGCAGCGCCTACATGGCCGGCGTG TTGCCGATCGCCGAGCTGGTGCGCCCACTGGATCACCTGACCCGCGAGTACAAAGCCCATCGCCTGCCGCTGGACCTGGACGAAGTCGAGTTGCTGCTGG AAGCCGAAGGCCTGTTCCAGCGTGGGTTGCGTCAACTGGACCGCGATCCCCTGGTGTCGATCAAGGGCGCGGATGACTTGATCCGCCGGACCCAGGCCCT GCTCGACCATCAACTGGCCGCGCTGCTCGACGCCCCCAACACGGGGTTGCGGATCAAGCGCGACCCGCAACTGATCGCCAACTTCCTGGCCCAGGGCATG GACATTCTGCTCGACGCCGAAAGCCTGCTGCGCCGCTGGCAGCAGCACCCCGGCGAACGCCAGGAACTCACCGCGCTGCTGGATGAATTGACCACGCTGG GGGAGGGCGCCCATGTCGCTGACCTGCACGCCATCGATGAACTCTGCGAAGCCTTGCTCGACCTCTACGGCGCCGTGGAAGAAAGCAGCCTGGCGGTCAG CGAGCGGTTTTTCCATGAGGCCGAGCAGGCCCATGAAGCGCTGATCAACATGCTCGATCAATTGGCCGCCGGCCAGGAAATCATCCCGGCACCGGCACGT GTACACGCCCTGCGCGAACTGTTGGACGATGCACTGGACCCTTCTGCCACCGGCCTGATCAAAAGCGACGGCAGCCGCGCCTTGAGCATCTCCGAACTGG GCGCCGCCACCGCGCAACTGCAGGATGAAACGTGGATCGACGATGAACTCGTGGAAATCTTCCTCGAAGAAGCCGTGGATATTCTCGACAGTGCGGGGCA GTCCCTGAAACGCTGGCTGCTGGAGCCGGACAGTGCCGCGCCGTTGTCGTCCCTGCAGCGCGACCTGCATACCCTCAAGGGCGGCGCGCGCATGGCCGAC ATCGGACCGGTGGCCGACCTGGCCCATGAACTGGAATGCCTGTACGAAGGCCTGGTGGATCGGCGCTACAGCTACTCCAGCGAGTTGTCGCAGGTGCTGA TGGCCAGCCATGAGCGACTGGCCTTGCAACTGGAGGAACTGCAGCACCATCAACCCTTGAGCGACAGCGCCGAACTGGTCGCCCGGTTGCGCGCGCTACG CCAGGGCGGCATGCCGGCTGTACAGGCCGCCCCACCTGCGGAAACGCCGGGCACCGACCCCGAGTTGCTGGACATCTTCCTCGAAGAAGCCGCCGACATT CTCGACAGCTCCGGCAGCGCCTTGCTGCGCTGGCAGGCCGAGCCGAACAATCGCCAGGAAGTCGAAACCCTGCTGCGCGACCTGCACACCCTCAAGGGCG GCGCGCGCATGGTCGAGATCGGGCCGATCGGTGACCTGGCCCATGAGCTGGAATTTCTCTACGAAGGGCTGTCCGCCGGTTTGCTCGCGCCGTCCGCCGA ACTGTTCGCGTTGCTGCAGGGCTGCCACGACCGCCTGGCGCAGATGATCGACGCCGTGGCGGATGGGCTGCCGGTGGGTTCGGTGGACAAGCTTATCGAA CGTATCAAGAGCCTGGTGCACCCCAGCGATGAGCCCGTGACGCCCGTGGCGCTGCCCGCAGGCAAGGCCGAAGCGGTGGTTGATCCCGGCGCCGACATGG TGAAGATTTCCGCTGACCTGCTGGACGACCTGGTCAACCTGGCCGGCGAGACCTCGATCTTCCGTGGTCGTATCGAGCAGCAAGTCAACGACGCGCGCAT TGCCCTGCATGAGGTGGAAACCACTATCGAACGCATGCGCGACCAACTGCGCCGCCTCGACACCGAAACCCAGGGGCGCATCCTCAGTCGTCAACAGGCC GAGGCCGAGCGCCTGGGCTATGAAGAATTCGACCCGCTGGAAATGGACCGTCATTCGCAGTTGCAGCAGCTGTCCCGGGCGCTGTCGGAATCGGCCTCCG ACCTGCTCGACCTCAAGGACACCCTCGACCGCCGCAACGAGGACGCCCATGGCCTGTTGCAGCAACAGGCGCGCATCAACACCGAGTTGCAGGAAGGCCT GATGCGCACGCGCATGGTGCCCTTCGAGCGCATGCTGCCGCGCCTCAAACGCATCGTGCGCCAGGTGGCGGGCGAGTTGGGCAAGGACGTGGAGTTCATC GTCGGCAATGCCGAGGGTGAAATGGACCGCAATGTGCTGGAGCGCATGGCGGCACCGCTGGAACACATGCTGCGCAACGCCGTCGACCATGGCCTGGAGC CCCGCGATGCGCGGCTGTTGGCCGGCAAGCCGGAGAAGGGCCGCATCACCCTGGACCTGACCCACGAAGGCGGCGATATCGTTTTCGACATGCGCGACGA CGGTGCCGGTGTGCCTCTGGACGCGGTGCGGCGCAAGGCGATCAAGCGCGGTTTGCTCGCCCCTCATCAAGAGATGAGCGACCGTGATGTGTTGCAGTTC ATTCTGCAGCCGGGGTTCTCTACGGCGGAAAAGATCACGCAGATTTCCGGGCGTGGCGTGGGCATGGACGTGGTGCACGAAGAAGTGCGCCAGCTCGGCG GCTCGATGTTCATTGACTCGACACCGGGGGAGGGCGTGCACTTTCGCATCCGCCTGCCGTTTACGGTGTCGGTCAATCGGGCGTTGATGGTGCACTGCGC GGACGATCAATATGCGATCCCGCTCAACACCATCGAAGGTCTGGTGCGGGTGCTGCCCCATGAGCTGGCGGGGCACTACCAGCAGGATCCGCCGTGTTAT GAATATGCCGGCCAACGCTACGAGCTGTTTTACCTGGGTGACCTGCTGCACACCGTCGGTCGCCCGAAATTACTGGGCCAGTATCAACCCGTGCCGGTGT TGCTGGTGCAGTGCAACGAGCGCCGTGTGGCGGTGCATGTGGACGCCATGGCCGGCACCCGGGAGATTGTGGTCAAGGGCCTGGGCCCGCAGTTTTCCGG GGTGCAGGGGTTATCCGGCGCGACCATCCTGGGGGATGGGCGCGTGGTGTTGATCATCGACCTGCTCGCGCACATCCGCGCCCGGCAACCGGCCTTGCCG GCCCAGGCGGTGGATGCTCCGTTGATCCTCAACGACCCGCTGAAAAAGCGCCCGCTGCTGGTGCTGGTGGTGGACGACTCGGTCACCGTGCGCAAAGTCA CCAGCCGCCTGTTGGAGCGCAACGGCATGAACGTACTCACCGCCAAGGACGGCATCGACGCCCTTGCCGTGCTCGAGGAACATACCCCCGACCTGATGCT GCTCGACATCGAAATGCCGCGCATGGACGGCTTCGAAGTGGCCATCCAGGTGCGCAATGACCCCCGGCTGATGCGCCTGCCGATCATCATGATCACCTCC CGCACCGGCCAGAAACACCGCGACCGCGCCATGGCCATCGGCGTCAACGACTACCTGGGCAAGCCGTACCAGGAATCGGTGCTGCTCGAAAGCATCGCCT ACTGGAGCAAATCCCGTGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCACCGCACCAGCCAACTCACCGGCCTGCTCCTGCCCCTGGCCGACCGCCACCTGATACTGCCCAACGTCGCCATCGCCGAATTGATCGACTTCCAGCGC GGCGAACCGGCCAGCGATGCGCCGCCGTGGTATTTGCGGCAAGTGACGTGGCGAGATCGACAAATCCCGTTGATCAGCTTTGAAGCGGCGTGCGGCGAGG CCGGCGTGACCGGCGAACGCTCGCGGATCGTGGTGTTGAATGCACTGGGCGGCCGACCGACGTTGAAGTTCATTGCGCTGGTGATCCAGGGGATTCCACG GTCGTACAAGCTCGATAGCGAATTGAGCTACGTGGACGTGCCGCTGTGCCCGCTGGAACTGGCGGCGGTGCAGGTGGGGGAACATGTGGCGAAGGTGCCG GATTTGATGGGGCTTGAAGCCTTATTGGTCGAGTCCGGACTGGCCTGAATCTAAGTCATGTGAGGATCCCCTGTGGGAGGGGGCTTGCCCCCGATGGCGG
|
|
| Amino Acid Sequence |
>histidine kinase
MVDRHDYVALEWVKGDIAETLKQARSALDAFVETHDDGVISQCLDAIHQVHGALQMVEFYGAALLAEEIEELALALQAGHVGQREESIRLLQQALGQLPL YLDRVHSARRDLPLVVLPLLNDLRSAHGESLLSETSLFSPQLLSIAPLAEDALAQRAPADLQAQLRQWHQLLQQALAGLLREDHGPSNLEDMARVFARLE ALCQGAPLLPLWQVASALVEGMLTGVVANSPALRSLLKASDKQLKRLLAQGIGGINQPAPDELLKSLLFYVAKVTRPTPRMQSLKERYSLDEALPDSAVV DAERARLAGPDRNAMGSVLGALCEELVRVKERLDLFVRSDRQHTSDLDALLAPLRQIADTLAVLGFGQPRKVIIDQLAVVLSLAQGHREPNDAVLMDVAG ALLYVEATLAGMVGTVEPEGHEESRLPTTDLTQIHQLVIRESCQCLQQAKELVIDCIEADWDRQRLESLPELLSQVRGALAMIPLPRAASLMRGCTDYVD EQLMVNDSPPSELQLGHFADVISSLEYYLERMLQDPDAAGERVLELATQSLAALGYLPAEKPWRQALAAPDGALSSEVAPSQSQFDALANPTSGLNPPAL QRPGSLLPPPADEAPIDDELRDVFLEETEEVLEVLHRHLPNSADKTAQGEMRRAFHTLKGSGRMVRALVLAELAWAVENLLNRVLERSVALGPEIQQVLD DAVALLPALIADFATGEQHQRDEVDALAARAHAWANGAPASVGEPHDPMLLEIFRNEAQSHLDSLNHFLQQAAEHVPLQVSDELQRALHTLKGSAYMAGV LPIAELVRPLDHLTREYKAHRLPLDLDEVELLLEAEGLFQRGLRQLDRDPLVSIKGADDLIRRTQALLDHQLAALLDAPNTGLRIKRDPQLIANFLAQGM DILLDAESLLRRWQQHPGERQELTALLDELTTLGEGAHVADLHAIDELCEALLDLYGAVEESSLAVSERFFHEAEQAHEALINMLDQLAAGQEIIPAPAR VHALRELLDDALDPSATGLIKSDGSRALSISELGAATAQLQDETWIDDELVEIFLEEAVDILDSAGQSLKRWLLEPDSAAPLSSLQRDLHTLKGGARMAD IGPVADLAHELECLYEGLVDRRYSYSSELSQVLMASHERLALQLEELQHHQPLSDSAELVARLRALRQGGMPAVQAAPPAETPGTDPELLDIFLEEAADI LDSSGSALLRWQAEPNNRQEVETLLRDLHTLKGGARMVEIGPIGDLAHELEFLYEGLSAGLLAPSAELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIE RIKSLVHPSDEPVTPVALPAGKAEAVVDPGADMVKISADLLDDLVNLAGETSIFRGRIEQQVNDARIALHEVETTIERMRDQLRRLDTETQGRILSRQQA EAERLGYEEFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLDRRNEDAHGLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAGELGKDVEFI VGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLEPRDARLLAGKPEKGRITLDLTHEGGDIVFDMRDDGAGVPLDAVRRKAIKRGLLAPHQEMSDRDVLQF ILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMFIDSTPGEGVHFRIRLPFTVSVNRALMVHCADDQYAIPLNTIEGLVRVLPHELAGHYQQDPPCY EYAGQRYELFYLGDLLHTVGRPKLLGQYQPVPVLLVQCNERRVAVHVDAMAGTREIVVKGLGPQFSGVQGLSGATILGDGRVVLIIDLLAHIRARQPALP AQAVDAPLILNDPLKKRPLLVLVVDDSVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEHTPDLMLLDIEMPRMDGFEVAIQVRNDPRLMRLPIIMITS RTGQKHRDRAMAIGVNDYLGKPYQESVLLESIAYWSKSRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|