Log of Annotation Updates

45 annotation updates returned
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Date Locus Tag Strain Description Submitter
Jan 28, 2014 PA5125.1 Pseudomonas aeruginosa PAO1 New gene. New feature type: ncRNA. New gene name: nrsZ. New product name: nitrogen-regulated sRNA, NrsZ. New product name confidence: Class 1. New PubMed ID: 24308329. Literature Review. Geoffrey L. Winsor, Brinkman Lab. Simon Fraser University, Canada
Jan 28, 2014 PA1242 Pseudomonas aeruginosa PAO1 New product name: SprP. New gene name: sprP. New product name confidence: Class 1. New function class: Translation, post-translational modification, degradation. New function class: Motility & Attachment. New PubMed reference: 24376018. Alexander Pelzer, Institute of Molecular Enzyme Technology, Germany
Jan 28, 2014 PA5077 Pseudomonas aeruginosa PAO1 New product name: OpgH. New gene name: opgH. New product name confidence: Class 1. New synonym for gene: mdoH. New synonym for CDS: MdoH. New PubMed reference: 17906125. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5078 Pseudomonas aeruginosa PAO1 New product name: OpgG. New gene name: opgG. New product name confidence: Class 1. New PubMed reference: 17906125. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2694 Pseudomonas aeruginosa PAO1 New product name: Trx2. New gene name: trx2. New product name confidence: Class 2. New PubMed reference: 23771858. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2856 Pseudomonas aeruginosa PAO1 New product name: lysophospholipase A. New product name confidence: Class 1. New synonym for CDS: TesA. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New PubMed reference: 23874889. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4737 Pseudomonas aeruginosa PAO1 New comment : Initiation codon of PA4737 overlaps with stop codon of PA4736. This is such that the first and second bases of the initiation codon are shared with the first and second bases of the termination codon. As a result of the tetranucleotide sequence TTGA, which is termed stop-start codon, the translation of the PA4737 gene may be directly linked to that of PA4736 through -1 frame shifting.. Andrew Chibeu, Canadian Research Institute for Food Safety
Jan 28, 2014 PA0102 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2053 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4676 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA1486 Pseudomonas aeruginosa PAO1 New product name: beta-peptidyl aminopeptidase. New gene name: bapF. New product name confidence: Class 1. New function class: Amino acid biosynthesis and metabolism. New PubMed reference: 23728237. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5018 Pseudomonas aeruginosa PAO1 New PubMed reference: 23687271. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2827 Pseudomonas aeruginosa PAO1 New PubMed reference: 23687271. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2196 Pseudomonas aeruginosa PAO1 New product name: TetR family transcriptional regulator. New product name confidence: Class 2. New PubMed reference: 24070609. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5134 Pseudomonas aeruginosa PAO1 New product name: carboxyl-terminal processing protease, CtpA. New gene name: ctpA. New product name confidence: Class 1. New PubMed reference: 24082078. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA3531 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 21574546. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4235 Pseudomonas aeruginosa PAO1 New product name: bacterial ferritin. New gene name: ftnA. New synonym for CDS: FtnA. New PubMed reference: 21574546. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4640 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 12480887. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA1494 Pseudomonas aeruginosa PAO1 New product name: mucoidy inhibitor gene A. New gene name: muiA. New product name confidence: Class 1. New function class: Transcriptional regulators. New PubMed reference: 24115673. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA3611 Pseudomonas aeruginosa PAO1 New PubMed reference: 24174223. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5499 Pseudomonas aeruginosa PAO1 New product name: zinc uptake regulator, Zur. New gene name: zur. New synonym for gene: np20. New synonym for CDS: transcriptional regulator np20. New PubMed reference: 24086521. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4844 Pseudomonas aeruginosa PAO1 New product name: CtpL. New gene name: ctpL. New PubMed reference: 24038698. New PubMed reference: 10852870. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2561 Pseudomonas aeruginosa PAO1 New product name: CtpH. New gene name: ctpH. New product name confidence: Class 1. New PubMed reference: 10852870. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0357 Pseudomonas aeruginosa PAO1 New gene name: mutY. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4400 Pseudomonas aeruginosa PAO1 New gene name: mutT. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5147 Pseudomonas aeruginosa PAO1 New gene name: mutM. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5204 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 22447897. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0908 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5288 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2615 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0967 Pseudomonas aeruginosa PAO1 New PubMed reference: 16105671. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5345 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Transcriptional regulators. New PubMed reference: 16105671. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5349 Pseudomonas aeruginosa PAO1 New product name: rubredoxin reductase. New gene name: rubB. New product name confidence: Class 1. New PubMed reference: 14574114. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5498 Pseudomonas aeruginosa PAO1 New gene name: znuA. New product name confidence: Class 1. New function class: Transport of small molecules. New PubMed reference: 24086521. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2621 Pseudomonas aeruginosa PAO1 New product name: ClpS. New gene name: clpS. New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Motility & Attachment. New function class: Cell wall / LPS / capsule. New PubMed reference: 22123702. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA1801 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Motility & Attachment. New PubMed reference: 22123702. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0355 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Motility & Attachment. New function class: Cell wall / LPS / capsule. New PubMed reference: 22123702. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4020 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 24041903. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2649 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 24041903. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0845 Pseudomonas aeruginosa PAO1 New product name: CerN. New gene name: cerN. New product name confidence: Class 1. New PubMed reference: 24465209. New PubMed reference: 10593963. New PubMed reference: 9603946. Matthew Wargo, University of Vermont, USA
Jan 28, 2014 PA5324 Pseudomonas aeruginosa PAO1 New product name: Sphingosine-responsive Regulator, SphR. New gene name: sphR. New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 24465209. Matthew Wargo, University of Vermont, USA
Jan 28, 2014 PA5325 Pseudomonas aeruginosa PAO1 New product name: SphA. New gene name: sphA. New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 24465209. Matthew Wargo, University of Vermont, USA
Jan 28, 2014 PA5326 Pseudomonas aeruginosa PAO1 New product name: SphD. New gene name: sphD. New product name confidence: Class 1. New PubMed reference: 24465209. Matthew Wargo, University of Vermont, USA
Jan 28, 2014 PA5327 Pseudomonas aeruginosa PAO1 New product name: SphC. New gene name: sphC. New product name confidence: Class 1. New PubMed reference: 24465209. Matthew Wargo, University of Vermont, USA
Jan 28, 2014 PA5328 Pseudomonas aeruginosa PAO1 New product name: SphB. New gene name: sphB. New product name confidence: Class 1. New PubMed reference: 24465209. Matthew Wargo, University of Vermont, USA
45 annotation updates returned