Pseudomonas aeruginosa CF127

Strain Overview
Organism Name Pseudomonas aeruginosa CF127 - Assembly GCF_000481945.1
Species Pseudomonas aeruginosa
Strain CF127
Description/Title Generic sample from Pseudomonas aeruginosa CF127
Annotated Genes 6447
Partial Genes 19
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 179
acsA
36		 mutL
3		 ppsA
13		 nuoD
4		 guaA
28		 trpE
7		 aroE
27
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481945.1
Assembly Status latest
Scaffolds 7
Contigs 20
Contig N50 1074942
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360660
NCBI Taxonomy ID 1402488
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6438
CDS 6356
tRNA 68
rRNA 14
pseudo 9

Subcellular Localization

Localization Count
Cytoplasmic 2882
Cytoplasmic Membrane 1430
Periplasmic 177
Outer Membrane 171
Extracellular 85
Unknown 1455
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

7 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF