Pseudomonas aeruginosa CF27

Strain Overview
Organism Name Pseudomonas aeruginosa CF27 - Assembly GCF_000481905.1
Species Pseudomonas aeruginosa
Strain CF27
Description/Title Generic sample from Pseudomonas aeruginosa CF27
Annotated Genes 5966
Partial Genes 25
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 485
guaA
5		 ppsA
14		 aroE
76		 acsA
11		 nuoD
61		 trpE
3		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481905.1
Assembly Status latest
Scaffolds 5
Contigs 23
Contig N50 1013663
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360662
NCBI Taxonomy ID 1402490
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5951
CDS 5880
tRNA 62
pseudo 15
rRNA 9

Subcellular Localization

Localization Count
Cytoplasmic 2679
Cytoplasmic Membrane 1340
Periplasmic 168
Outer Membrane 171
Extracellular 76
Unknown 1293
Unknown (This protein may have multiple localization sites) 153
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF