Pseudomonas aeruginosa JJ692

Strain Overview
Organism Name Pseudomonas aeruginosa JJ692 - Assembly GCF_000481805.1
Species Pseudomonas aeruginosa
Strain JJ692
Description/Title Generic sample from Pseudomonas aeruginosa JJ692
Annotated Genes 6235
Partial Genes 16
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease urinary tract infection
Geographic Location
Location Name USA
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
mutL
13		 acsA
38		 nuoD
1		 aroE
11		 guaA
3		 ppsA
2		 trpE
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481805.1
Assembly Status latest
Scaffolds 5
Contigs 17
Contig N50 1406148
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360667
NCBI Taxonomy ID 1402495
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6230
CDS 6155
tRNA 63
rRNA 12
pseudo 5

Subcellular Localization

Localization Count
Cytoplasmic 2765
Cytoplasmic Membrane 1367
Periplasmic 176
Outer Membrane 175
Extracellular 75
Unknown 1446
Unknown (This protein may have multiple localization sites) 151
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF