Pseudomonas aeruginosa BWHPSA017

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA017
Species Pseudomonas aeruginosa
Strain BWHPSA017
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA017
Annotated Genes 6380
Partial Genes 19
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source urine
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
guaA
36		 acsA
28		 aroE
5		 trpE
7		 mutL
3		 ppsA
13		 nuoD
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481365.1
Assembly Status latest
Scaffolds 5
Contigs 19
Contig N50 859179
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360689
NCBI Taxonomy ID 1402517
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6367
CDS 6289
tRNA 66
pseudo 13
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 2816
Cytoplasmic Membrane 1425
Periplasmic 177
Outer Membrane 170
Extracellular 77
Unknown 1471
Unknown (This protein may have multiple localization sites) 153
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF