Pseudomonas aeruginosa BWHPSA018

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA018
Species Pseudomonas aeruginosa
Strain BWHPSA018
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA018
Annotated Genes 6155
Partial Genes 23
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source Wound
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2636
trpE
1		 aroE
5		 ppsA
53		 guaA
11		 nuoD
1		 mutL
7		 acsA
17
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481345.1
Assembly Status latest
Scaffolds 9
Contigs 25
Contig N50 562517
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360690
NCBI Taxonomy ID 1402518
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6151
CDS 6074
tRNA 65
rRNA 12
pseudo 4

Subcellular Localization

Localization Count
Cytoplasmic 2727
Cytoplasmic Membrane 1358
Periplasmic 179
Outer Membrane 163
Extracellular 81
Unknown 1421
Unknown (This protein may have multiple localization sites) 145
Flagellar 17
Fimbrial 13
T3SS 4

Replicons

9 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF