Pseudomonas aeruginosa BWHPSA024

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA024
Species Pseudomonas aeruginosa
Strain BWHPSA024
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA024
Annotated Genes 6313
Partial Genes 13
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source abdominal wound
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 845
guaA
1		 aroE
5		 nuoD
4		 trpE
7		 acsA
11		 ppsA
4		 mutL
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481225.1
Assembly Status latest
Scaffolds 5
Contigs 14
Contig N50 776349
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360696
NCBI Taxonomy ID 1402524
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6311
CDS 6237
tRNA 63
rRNA 11
pseudo 2

Subcellular Localization

Localization Count
Cytoplasmic 2808
Cytoplasmic Membrane 1398
Periplasmic 175
Outer Membrane 170
Extracellular 72
Unknown 1462
Unknown (This protein may have multiple localization sites) 152
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF