Pseudomonas aeruginosa BWHPSA026

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA026
Species Pseudomonas aeruginosa
Strain BWHPSA026
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA026
Annotated Genes 6313
Partial Genes 20
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 377
trpE
4		 ppsA
6		 mutL
5		 guaA
5		 acsA
103		 aroE
8		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481185.1
Assembly Status latest
Scaffolds 11
Contigs 23
Contig N50 715928
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360698
NCBI Taxonomy ID 1402526
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6299
CDS 6218
tRNA 66
rRNA 15
pseudo 14

Subcellular Localization

Localization Count
Cytoplasmic 2781
Cytoplasmic Membrane 1356
Periplasmic 172
Outer Membrane 177
Extracellular 82
Unknown 1493
Unknown (This protein may have multiple localization sites) 157
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

11 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF