Pseudomonas aeruginosa BWHPSA027

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA027
Species Pseudomonas aeruginosa
Strain BWHPSA027
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA027
Annotated Genes 6382
Partial Genes 26
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source broncho-alveolar lavage
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 253
acsA
4		 ppsA
6		 nuoD
1		 trpE
3		 guaA
16		 mutL
12		 aroE
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481165.1
Assembly Status latest
Scaffolds 8
Contigs 24
Contig N50 741007
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360699
NCBI Taxonomy ID 1402527
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6379
CDS 6298
tRNA 67
rRNA 14
pseudo 3

Subcellular Localization

Localization Count
Cytoplasmic 2790
Cytoplasmic Membrane 1399
Periplasmic 185
Outer Membrane 181
Extracellular 83
Unknown 1513
Unknown (This protein may have multiple localization sites) 147
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

8 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF