Pseudomonas aeruginosa BWHPSA028

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA028
Species Pseudomonas aeruginosa
Strain BWHPSA028
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA028
Annotated Genes 7013
Partial Genes 51
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source sputum
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-02-01T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 252
acsA
6		 ppsA
4		 aroE
28		 trpE
7		 guaA
4		 nuoD
3		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481145.1
Assembly Status latest
Scaffolds 14
Contigs 42
Contig N50 854408
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360700
NCBI Taxonomy ID 1402528
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7012
CDS 6934
tRNA 67
rRNA 11
pseudo 1

Subcellular Localization

Localization Count
Cytoplasmic 3014
Cytoplasmic Membrane 1477
Periplasmic 181
Outer Membrane 182
Extracellular 88
Unknown 1828
Unknown (This protein may have multiple localization sites) 164
Flagellar 17
Fimbrial 17
T3SS 4

Replicons

14 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF