Pseudomonas aeruginosa BL09

Strain Overview
Organism Name Pseudomonas aeruginosa BL09
Species Pseudomonas aeruginosa
Strain BL09
Description/Title Generic sample from Pseudomonas aeruginosa BL09
Annotated Genes 6364
Partial Genes 29
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source corneal scraping
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 309
acsA
13		 aroE
8		 trpE
15		 mutL
3		 ppsA
17		 nuoD
1		 guaA
9
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000480965.1
Assembly Status latest
Scaffolds 11
Contigs 29
Contig N50 804025
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360722
NCBI Taxonomy ID 1402550
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6360
CDS 6277
tRNA 69
rRNA 14
pseudo 4

Subcellular Localization

Localization Count
Cytoplasmic 2797
Unknown 1496
Cytoplasmic Membrane 1392
Outer Membrane 182
Periplasmic 176
Unknown (This protein may have multiple localization sites) 159
Extracellular 75
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

11 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF