Pseudomonas aeruginosa BL19

Strain Overview
Organism Name Pseudomonas aeruginosa BL19
Species Pseudomonas aeruginosa
Strain BL19
Description/Title Generic sample from Pseudomonas aeruginosa BL19
Annotated Genes 5860
Partial Genes 19
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source corneal scraping
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1631
nuoD
3		 trpE
10		 acsA
8		 aroE
5		 mutL
3		 ppsA
3		 guaA
12
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000480765.1
Assembly Status latest
Scaffolds 5
Contigs 20
Contig N50 813252
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360732
NCBI Taxonomy ID 1402560
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5857
CDS 5780
tRNA 65
rRNA 12
pseudo 3

Subcellular Localization

Localization Count
Cytoplasmic 2651
Cytoplasmic Membrane 1300
Periplasmic 167
Outer Membrane 169
Extracellular 77
Unknown 1273
Unknown (This protein may have multiple localization sites) 143
Flagellar 17
Fimbrial 3
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF