Pseudomonas stutzeri 19SMN4

Strain Overview
Organism Name Pseudomonas stutzeri 19SMN4
Species Pseudomonas stutzeri
Strain 19SMN4
Description/Title Microbe sample for Pseudomonas stutzeri 19SMN4
Annotated Genes 4493
Partial Genes 87
Host Information
Geographic Location
Location Name Spain: Barcelona
Isolation Source marine sediment
Latitude/Longitude 41.39 N 2.23 E
Sample Provider
Name Rafael Bosch
E-mail rbosch@uib.es
Institution Univesitat de les Illes Balears (UIB)
Date Collected Feb-1988

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000661915.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02692943
NCBI Taxonomy ID 316
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas stutzeri strain 19SMN4, complete genome.
Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid.

Annotated Features

Feature Count
gene 4467
CDS 4394
tRNA 60
pseudo 26
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2001
Cytoplasmic Membrane 1043
Periplasmic 122
Outer Membrane 88
Extracellular 40
Unknown 978
Unknown (This protein may have multiple localization sites) 122

Replicons

Name Length GC
Pseudomonas stutzeri strain 19SMN4, complete genome. 4725662 bp 62.3%
Replicon details
Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid. 107733 bp 58.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF