| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. 10B238 |
| Species | Pseudomonas sp. |
| Strain | 10B238 |
| Description/Title | Microbe sample isolated from the depth of 1464m in the South China Sea |
| Annotated Genes | 4580 |
| Partial Genes | 115 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | China: the South China Sea |
| Isolation Source | deep-sea sediment |
| Sample Provider | |
|---|---|
| Name | HuaQi Pan |
| 258288537@qq.com | |
| Institution | Chinese Academy of Sciences |
| Date Collected | 16-Aug-2010 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 72 |
| Contigs | 81 |
| Contig N50 | 312794 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03267211 |
| NCBI Taxonomy ID | 1586417 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4546 |
| CDS | 4486 |
| tRNA | 56 |
| pseudo | 34 |
| rRNA | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1980 |
| Cytoplasmic Membrane | 1124 |
| Periplasmic | 130 |
| Outer Membrane | 83 |
| Extracellular | 38 |
| Unknown | 1013 |
| Unknown (This protein may have multiple localization sites) | 118 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |