| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas brassicacearum PP1_210F |
| Species | Pseudomonas brassicacearum |
| Strain | PP1_210F |
| Description/Title | Microbe sample from Pseudomonas brassicacearum PP1_210F |
| Annotated Genes | 5993 |
| Partial Genes | 68 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | France: Pas De Calais |
| Isolation Source | potato rhizosphere |
| Sample Provider | |
|---|---|
| Name | Denis Faure |
| denis.faure@isv.cnrs-gif.fr | |
| Institution | CNRS - UPR2355 |
| Date Collected | 2010 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 5 |
| Contigs | 51 |
| Contig N50 | 210148 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03196957 |
| NCBI Taxonomy ID | 1403314 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5838 |
| CDS | 5756 |
| pseudo | 155 |
| tRNA | 66 |
| rRNA | 15 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2584 |
| Unknown | 1365 |
| Cytoplasmic Membrane | 1332 |
| Periplasmic | 177 |
| Outer Membrane | 125 |
| Unknown (This protein may have multiple localization sites) | 123 |
| Extracellular | 50 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |