| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa NCGM1900 |
| Species | Pseudomonas aeruginosa |
| Strain | NCGM1900 |
| Description/Title | Human metagenome DNA sample from a male participant in the dbGaP study "Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease" |
| Annotated Genes | 6354 |
| Partial Genes | 49 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | Japan: Hyogo prefecture |
| Isolation Source | catheter |
| Latitude/Longitude | NA |
| Environmental Feature (?) | Multidrug-resistant Pseudomonas aeruginosa |
| Environmental Material (?) | Urinary catheter |
| Sample Provider | |
|---|---|
| Name | |
| Institution | National Center for Global Health and Medicine |
| Date Collected | 2012 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 235 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMD00018700 |
| NCBI Taxonomy ID | 646099 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900. |
| Feature | Count |
|---|---|
| gene | 6329 |
| CDS | 6247 |
| tRNA | 69 |
| pseudo | 25 |
| rRNA | 12 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2781 |
| Cytoplasmic Membrane | 1337 |
| Periplasmic | 175 |
| Outer Membrane | 163 |
| Extracellular | 73 |
| Unknown | 1563 |
| Unknown (This protein may have multiple localization sites) | 155 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1900. | 6814936 bp | 66.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |