Pseudomonas aeruginosa BWHPSA037

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA037
Species Pseudomonas aeruginosa
Strain BWHPSA037
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA037
Annotated Genes 6728
Partial Genes 140
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source broncho-alveolar lavage
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
guaA
30		 nuoD
1		 ppsA
4		 acsA
105		 aroE
5		 mutL
~3		 trpE
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520455.1
Assembly Status latest
Scaffolds 29
Contigs 51
Contig N50 401385
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360701
NCBI Taxonomy ID 1402529
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6703
CDS 6615
tRNA 68
pseudo 25
rRNA 17
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2905
Cytoplasmic Membrane 1426
Periplasmic 187
Outer Membrane 174
Extracellular 80
Unknown 1687
Unknown (This protein may have multiple localization sites) 156

Replicons

29 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF