| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fulva NBRC 16636 = DSM 17004 - Assembly GCF_000621265.1 |
| Species | Pseudomonas fulva |
| Strain | NBRC 16636 = DSM 17004 |
| Description/Title | Sample from Pseudomonas fulva NBRC 16637 = DSM 17717 |
| Annotated Genes | 4282 |
| Partial Genes | 134 |
| Host Information |
|---|
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | DOE Joint Genome Institute |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 48 |
| Contigs | 56 |
| Contig N50 | 178183 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02743980 |
| NCBI Taxonomy ID | 1215102 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4249 |
| CDS | 4178 |
| tRNA | 58 |
| pseudo | 33 |
| rRNA | 10 |
| ncRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1917 |
| Cytoplasmic Membrane | 964 |
| Periplasmic | 133 |
| Outer Membrane | 101 |
| Extracellular | 35 |
| Unknown | 933 |
| Unknown (This protein may have multiple localization sites) | 95 |
| Flagellar | 17 |
| Fimbrial | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |