Pseudomonas aeruginosa BWH060

Strain Overview
Organism Name Pseudomonas aeruginosa BWH060
Species Pseudomonas aeruginosa
Strain BWH060
Description/Title Generic sample from Pseudomonas aeruginosa BWH060
Annotated Genes 6213
Partial Genes 59
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 10/9/2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
trpE
13		 nuoD
1		 guaA
13		 aroE
4		 ppsA
17		 mutL
3		 acsA
18
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629385.1
Assembly Status latest
Scaffolds 6
Contigs 18
Contig N50 754707
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402444
NCBI Taxonomy ID 1418246
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6172
CDS 6102
tRNA 61
pseudo 41
rRNA 8
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2728
Cytoplasmic Membrane 1385
Periplasmic 177
Outer Membrane 175
Extracellular 65
Unknown 1417
Unknown (This protein may have multiple localization sites) 155
Flagellar 17
Fimbrial 5
T3SS 4

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF