Pseudomonas aeruginosa BWHPSA038

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA038
Species Pseudomonas aeruginosa
Strain BWHPSA038
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA038
Annotated Genes 6099
Partial Genes 71
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source nail bed
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
ppsA
~126		 acsA
5		 mutL
10		 nuoD
1		 guaA
60		 trpE
8		 aroE
208
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520435.1
Assembly Status latest
Scaffolds 12
Contigs 37
Contig N50 1136197
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360702
NCBI Taxonomy ID 1402530
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6066
CDS 5990
tRNA 63
pseudo 33
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2711
Cytoplasmic Membrane 1336
Periplasmic 175
Outer Membrane 173
Extracellular 71
Unknown 1372
Unknown (This protein may have multiple localization sites) 152
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

12 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF