Pseudomonas aeruginosa BWHPSA039

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA039
Species Pseudomonas aeruginosa
Strain BWHPSA039
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA039
Annotated Genes 6393
Partial Genes 73
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source urine
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 179
ppsA
13		 nuoD
4		 aroE
27		 mutL
3		 trpE
7		 acsA
36		 guaA
28
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520415.1
Assembly Status latest
Scaffolds 10
Contigs 31
Contig N50 660092
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360703
NCBI Taxonomy ID 1402531
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6357
CDS 6279
tRNA 65
pseudo 36
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2827
Cytoplasmic Membrane 1413
Periplasmic 171
Outer Membrane 166
Extracellular 77
Unknown 1464
Unknown (This protein may have multiple localization sites) 161
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

10 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF