| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa BWHPSA040 |
| Species | Pseudomonas aeruginosa |
| Strain | BWHPSA040 |
| Description/Title | Generic sample from Pseudomonas aeruginosa BWHPSA040 |
| Annotated Genes | 5862 |
| Partial Genes | 30 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | sputum |
| Sample Provider | |
|---|---|
| Name | Susanna Hamilton |
| suhamil@broadinstitute.org | |
| Institution | Broad Institute |
| Date Collected | 2013-03-13T00:00:00 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 274 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 3 |
| Contigs | 20 |
| Contig N50 | 923623 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02360704 |
| NCBI Taxonomy ID | 1402532 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5847 |
| CDS | 5770 |
| tRNA | 64 |
| pseudo | 15 |
| rRNA | 12 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2635 |
| Cytoplasmic Membrane | 1330 |
| Periplasmic | 168 |
| Outer Membrane | 163 |
| Extracellular | 70 |
| Unknown | 1248 |
| Unknown (This protein may have multiple localization sites) | 156 |
| Flagellar | 17 |
| Fimbrial | 4 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa BWHPSA040 adkfQ-supercont1.1, whole genome shotgun sequence. | 4926464 bp | 65.9% |
Replicon details
|
| Pseudomonas aeruginosa BWHPSA040 adkfQ-supercont1.2, whole genome shotgun sequence. | 1507895 bp | 65.9% |
Replicon details
|
| Pseudomonas aeruginosa BWHPSA040 adkfQ-supercont1.3, whole genome shotgun sequence. | 18629 bp | 15.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |