Pseudomonas aeruginosa BWHPSA043

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA043
Species Pseudomonas aeruginosa
Strain BWHPSA043
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA043
Annotated Genes 6342
Partial Genes 111
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source wound
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 926
mutL
99		 aroE
1		 trpE
87		 ppsA
20		 nuoD
24		 acsA
29		 guaA
97
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520335.1
Assembly Status latest
Scaffolds 27
Contigs 39
Contig N50 650022
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360707
NCBI Taxonomy ID 1402535
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6299
CDS 6209
tRNA 68
pseudo 43
rRNA 21
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2803
Cytoplasmic Membrane 1372
Periplasmic 181
Outer Membrane 174
Extracellular 67
Unknown 1448
Unknown (This protein may have multiple localization sites) 164
Flagellar 17
Fimbrial 6
T3SS 4

Replicons

27 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF