This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 2353 | GCF_002194075.1 latest |
118 | Contig | 6388 (136) | SAMN07185685 | human | not collected | blood | USA | 348 (paeruginosa) | JCVI |
Strain Details
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Pseudomonas aeruginosa 2357 | GCF_002193975.1 latest |
93 | Contig | 6279 (123) | SAMN07185680 | human | not collected | nasopharynx | USA | 235 (paeruginosa) | JCVI |
Strain Details
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Pseudomonas aeruginosa 235M0162 | GCF_020640735.1 latest |
- | Scaffold | 6367 (203) | SAMN22048348 | bacteremia | blood | unknown | 111 (paeruginosa) | OHSU |
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Pseudomonas aeruginosa 236 | GCF_016836565.1 latest |
- | Scaffold | 6391 (154) | SAMN17723437 | Congenital acyanotic heart disease | India: Puttaparthi, CTVS ICU | 1203 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 237 | GCF_016836545.1 latest |
- | Scaffold | 6390 (161) | SAMN17723438 | Congenital acyanotic heart disease | India: Puttaparthi, CTVS ICU | 1203 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 239 | GCF_016836505.1 latest |
- | Scaffold | 6473 (163) | SAMN17723439 | Renal calculi | India: Puttaparthi, Urology Ward | 654 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
Strain Details
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Pseudomonas aeruginosa 239/1 | GCF_022552175.1 latest |
- | Scaffold | 5859 (112) | SAMN23763320 | Russia: Samara | 242 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 239A, isolate 13121-1 | GCF_003698565.1 latest |
- | Contig | 6698 (199) | SAMN05226626 | human | acute infection | patient with acute infection | France | University Laval |
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Pseudomonas aeruginosa 241 | GCF_016836525.1 latest |
- | Scaffold | 5855 (129) | SAMN17723440 | Congenital acyanotic heart disease | India: Puttaparthi, CTVS ICU | 639 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 243931 | GCF_007559125.1 latest |
- | Complete Genome | 6049 (38) | SAMN12306121 | urinary tract infection | sputum specimen | China: Zhejiang | 235 (paeruginosa) | Beijing Institute of Microbiology and Epidemiology |
Strain Details
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Pseudomonas aeruginosa 248/3 | GCF_022552215.1 latest |
- | Scaffold | 5863 (86) | SAMN23763321 | Russia: Samara | 231 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 24Pae112 | GCF_003433235.1 latest |
- | Complete Genome | 6677 (71) | SAMN07958398 | Sepsis | blood | Colombia | 235 (paeruginosa) | El Bosque University |
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Pseudomonas aeruginosa 25 | GCF_004351755.1 latest |
- | Scaffold | 6326 (1553) | SAMN10743678 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 250/1 | GCF_022552155.1 latest |
- | Scaffold | 5919 (205) | SAMN23763322 | Russia: Samara | 882 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 251 | GCF_016836485.1 latest |
- | Scaffold | 6481 (163) | SAMN17723441 | Retroperitoneal fistula | India: Puttaparthi, Urology Ward | 654 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 2543_S1 | GCF_021060745.1 latest |
- | Contig | 6072 (281) | SAMN20752077 | Spain | 3080 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
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Pseudomonas aeruginosa 255 | GCF_016836465.1 latest |
- | Scaffold | 6420 (169) | SAMN17723442 | Vesicoureteral reflux | India: Puttaparthi, Urology Ward | 654 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 2570 | GCF_002193755.1 latest |
101 | Contig | 6421 (137) | SAMN07185696 | human | not collected | blood | USA | 389 (paeruginosa) | JCVI |
Strain Details
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Pseudomonas aeruginosa 2596 | GCF_009650455.1 latest |
- | Contig | 6198 (160) | SAMN12636343 | Cystic fibrosis | sputum | France: Lyon | 253 (paeruginosa) | CIRI |
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Pseudomonas aeruginosa 259S240811BSL_PA1 | GCF_004374515.1 latest |
- | Contig | 6296 (77) | SAMN10478163 | human | cystic fibrosis | sputum | Canada: Montreal | 17 (paeruginosa) | University Laval |
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