This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 196337 | GCF_019022585.1 latest |
- | Contig | 6371 (97) | SAMN18680955 | Unknown | Abdominal wound | France: Lille | 395 (paeruginosa) | French National Center for Antibiotics Resistance |
Strain Details
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Pseudomonas aeruginosa 19660 | GCF_000481765.1 latest |
27 | Scaffold | 6271 (31) | SAMN02360669 | mouse | cornea/ocular infection | USA | Broad Institute |
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Pseudomonas aeruginosa 197S020911BSL_PA1 | GCF_004375205.1 latest |
- | Contig | 5912 (67) | SAMN10478157 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 197S020911BSL_PA2 | GCF_004375195.1 latest |
- | Contig | 5915 (66) | SAMN10478158 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
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Pseudomonas aeruginosa 197S020911BSL_PA3 | GCF_004375175.1 latest |
- | Contig | 6173 (173) | SAMN10478159 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 197S020911BSL_PA4 | GCF_004375185.1 latest |
- | Contig | 5850 (82) | SAMN10478160 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
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Pseudomonas aeruginosa 197WW | GCF_025456555.1 latest |
- | Contig | 6676 (178) | SAMN28578942 | wastewater | Romania: Iasi | 640 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 1988_S20 | GCF_021061705.1 latest |
- | Contig | 6605 (305) | SAMN20752048 | high risk patient colonization | Spain | 111 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
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Pseudomonas aeruginosa 198WW | GCF_025456695.1 latest |
- | Contig | 6462 (199) | SAMN28578943 | wastewater | Romania: Cluj | 620 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 199 | GCF_016836685.1 latest |
- | Scaffold | 6359 (151) | SAMN17723431 | Ureteropelvic junction (UPJ) obstruction | India: Puttaparthi, Urology Ward | 654 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 199CS | GCF_025459445.1 latest |
- | Contig | 6193 (157) | SAMN28578944 | missing | Romania: Cluj | 233 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 19BR | GCF_000223945.1 latest |
1 | Complete Genome | 6189 (4) | SAMN02471401 | human | Brazil | 277 (paeruginosa) |
IBIS, Universite Laval
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Pseudomonas aeruginosa 19R | GCF_004372905.1 latest |
- | Scaffold | 6073 (84) | SAMN10478259 | sandy soil contaminated with hydrocarbons for 50 years | Canada: L Assomption | University Laval |
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Pseudomonas aeruginosa 19SJO | GCF_004378685.1 latest |
- | Contig | 6080 (94) | SAMN10478257 | sandy soil contaminated with hydrocarbons for 50 years | Canada: L Assomption | University Laval |
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Pseudomonas aeruginosa 19SJV | GCF_004373585.1 latest |
- | Scaffold | 6080 (94) | SAMN10478258 | sandy soil contaminated with hydrocarbons for 50 years | Canada: L Assomption | University Laval |
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Pseudomonas aeruginosa 19SV | GCF_004372645.1 latest |
- | Contig | 6078 (91) | SAMN10478260 | sandy soil contaminated with hydrocarbons for 50 years | Canada: L Assomption | University Laval |
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Pseudomonas aeruginosa 1BAE, isolate KK1 | GCF_003698585.1 latest |
- | Contig | 6333 (103) | SAMN05226628 | human | cystic fibrosis | Cystic fibrosis patient | Germany | 155 (paeruginosa) | University Laval |
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Pseudomonas aeruginosa 2-29 | GCF_015317845.1 latest |
- | Contig | 6406 (956) | SAMN14776826 | Infection | Urinary tract infection | Portugal: Almada | 235 (paeruginosa) | Hospital Universitario Ramon y Cajal (IRYCIS) |
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Pseudomonas aeruginosa 2.1 | GCF_004370195.1 latest |
- | Contig | 5897 (106) | SAMN10478390 | human | cystic fibrosis | sputum | Canada: Chicoutimi | University Laval |
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Pseudomonas aeruginosa 2/1 | GCF_022552865.1 latest |
- | Scaffold | 6321 (127) | SAMN23763284 | Russia: Samara | 395 (paeruginosa) | Pirogov Russian National Research Medical University |
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