| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 196337 |
| Species | Pseudomonas aeruginosa |
| Strain | 196337 |
| Description/Title | |
| Annotated Genes | 6371 |
| Partial Genes | 97 |
| Host Information | |
|---|---|
| Host Species Disease | Unknown |
| Geographic Location | |
|---|---|
| Location Name | France: Lille |
| Isolation Source | Abdominal wound |
| Latitude/Longitude | 50.63 N 3.06 E |
| Sample Provider | |
|---|---|
| Name | Pauline Triponney |
| ptriponney@chu-besancon.fr | |
| Institution | French National Center for Antibiotics Resistance |
| Date Collected | 2018-12-29 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 395 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 36 |
| Contigs | |
| Contig N50 | 556775 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN18680955 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6371 |
| CDS | 6299 |
| pseudo | 109 |
| tRNA | 63 |
| rRNA | 6 |
| ncRNA | 4 |
| tmRNA | 1 |
| pseudogenic_tRNA | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |