This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 1650 | GCF_003863745.1 latest |
- | Contig | 5737 (164) | SAMN10484675 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Western General, Edinburgh | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 1653 | GCF_003863515.1 latest |
- | Contig | 5669 (155) | SAMN10484676 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Raigmore Hospital, Inverness | 845 (paeruginosa) | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 1655 | GCF_003863725.1 latest |
- | Contig | 5924 (219) | SAMN10484677 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Royal Infirmary, Dumfries & Galloway | 132 (paeruginosa) | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 1658 | GCF_003863495.1 latest |
- | Contig | 6042 (135) | SAMN10484678 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Western General Hospital, Edinburgh | 146 (paeruginosa) | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 166 | GCF_004349895.1 latest |
- | Contig | 6588 (224) | SAMN10743807 | infection | hospital | Italy: Trento | 155 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 166-2 | GCF_030326365.1 latest |
- | Contig | 6535 (59) | SAMN15324864 | intestine | China | 313 (paeruginosa) | City University of Hong Kong |
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Pseudomonas aeruginosa 1663 | GCF_003863485.1 latest |
- | Contig | 5920 (227) | SAMN10484679 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 1664 | GCF_003863715.1 latest |
- | Contig | 5883 (179) | SAMN10484680 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 167 | GCF_004350415.1 latest |
- | Contig | 6586 (370) | SAMN10743808 | infection | hospital | Italy: Trento | 298 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 1689 | GCF_003863445.1 latest |
- | Contig | 5417 (150) | SAMN10484682 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 169 | GCF_004350405.1 latest |
- | Contig | 5794 (107) | SAMN10743809 | infection | hospital | Italy: Trento | 2241 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 17 - Assembly GCF_004351195.1 | GCF_004351195.1 latest |
- | Scaffold | 6190 (1227) | SAMN10743671 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
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Pseudomonas aeruginosa 17 - Assembly GCF_004369995.1 | GCF_004369995.1 latest |
- | Contig | 6575 (110) | SAMN10478406 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 179 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 17/2 | GCF_022552895.1 latest |
- | Scaffold | 5804 (102) | SAMN23763286 | Russia: Samara | 231 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 170 | GCF_004349865.1 latest |
- | Contig | 6392 (195) | SAMN10743810 | infection | hospital | Italy: Trento | 309 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 17032085 | GCF_023756765.1 latest |
- | Contig | 6004 (96) | SAMN28951491 | bile | China | 260 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
Strain Details
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Pseudomonas aeruginosa 1704 | GCF_024520285.1 latest |
- | Scaffold | 6493 (202) | SAMN27177302 | China:Zhejiang | 360 (paeruginosa) | Soochow University |
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Pseudomonas aeruginosa 17052259 | GCF_024262085.1 latest |
- | Contig | 6497 (157) | SAMN28955354 | bile | China | 245 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 17053810 | GCF_023756725.1 latest |
- | Contig | 6639 (124) | SAMN28951462 | sputum | China | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 17063130 | GCF_024262105.1 latest |
- | Contig | 6328 (135) | SAMN28950855 | China | 298 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
Strain Details
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