Pseudomonas aeruginosa 166-2

Strain Overview
Organism Name Pseudomonas aeruginosa 166-2
Species Pseudomonas aeruginosa
Strain 166-2
Description/Title
Annotated Genes 6535
Partial Genes 59
Host Information
Geographic Location
Location Name China
Isolation Source intestine
Sample Provider
Name Ning Dong
E-mail dong.ning@connect.polyu.hk
Institution City University of Hong Kong
Date Collected 2019

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 313
nuoD
8		 trpE
40		 mutL
6		 acsA
47		 aroE
8		 ppsA
11		 guaA
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_030326365.1
Assembly Status latest
Scaffolds 3
Contigs
Contig N50 6438660
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN15324864
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6535
CDS 6475
pseudo 79
tRNA 63
rRNA 12
ncRNA 3
tmRNA 1

Replicons

Name Length GC
Pseudomonas aeruginosa strain 166-2 1, whole genome shotgun sequence 6438660 bp 66.3%
Replicon details
Pseudomonas aeruginosa strain 166-2 2, whole genome shotgun sequence 431461 bp 56.3%
Replicon details
Pseudomonas aeruginosa strain 166-2 3, whole genome shotgun sequence 116925 bp 67.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF