This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 157 | GCF_004349995.1 latest |
- | Contig | 6620 (140) | SAMN10743800 | infection | hospital | Italy: Trento | 395 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 1578_S13 | GCF_021061335.1 latest |
- | Contig | 6675 (278) | SAMN20752056 | pneumonia | Spain | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
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Pseudomonas aeruginosa 158 | GCF_004349975.1 latest |
- | Contig | 6529 (386) | SAMN10743801 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 158/4 | GCF_022552455.1 latest |
- | Scaffold | 6207 (134) | SAMN23763307 | Russia: Samara | 2465 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 159 | GCF_004349985.1 latest |
- | Scaffold | 6780 (437) | SAMN10743802 | infection | hospital | Italy: Trento | 446 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 159-2 | GCF_030326425.1 latest |
- | Scaffold | 6671 (226) | SAMN15324862 | intestine | China | 313 (paeruginosa) | City University of Hong Kong |
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Pseudomonas aeruginosa 159/5 | GCF_022552415.1 latest |
- | Scaffold | 5880 (118) | SAMN23763308 | Russia: Samara | 708 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 1590 | GCF_003863645.1 latest |
- | Contig | 6159 (157) | SAMN10484666 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | 699 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 15958 | GCF_017288095.1 latest |
- | Scaffold | 5792 (185) | SAMN17860404 | sputum | Nigeria | 2935 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 15964 | GCF_017838075.1 latest |
- | Contig | 6547 (196) | SAMN17860409 | wound | Nigeria | 1203 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 15965 | GCF_017292115.1 latest |
- | Contig | 6139 (185) | SAMN17860410 | urine | Nigeria | 773 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 15966 | GCF_017838135.1 latest |
- | Contig | 6525 (197) | SAMN17860411 | urine | Nigeria | 1203 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 15986 | GCF_017582685.1 latest |
- | Contig | 6540 (246) | SAMN17860427 | wound | Nigeria | 654 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 159M0046 | GCF_020640765.1 latest |
- | Contig | 6335 (718) | SAMN22048414 | bacteremia | blood | unknown | 235 (paeruginosa) | OHSU |
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Pseudomonas aeruginosa 15_0495 | GCF_028435825.1 latest |
- | Contig | 5618 (115) | SAMN18869630 | Cystic Fibrosis | sputum | Spain: Santander | ITACYL |
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Pseudomonas aeruginosa 15_4983 | GCF_028435785.1 latest |
- | Contig | 5714 (188) | SAMN18869637 | Cystic Fibrosis | sputum | Spain: Santander | 569 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 15_6548 | GCF_028435815.1 latest |
- | Contig | 5905 (182) | SAMN18869633 | Cystic Fibrosis | sputum | Spain: Santander | 379 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 15_7690 | GCF_028435945.1 latest |
- | Contig | 5871 (146) | SAMN18869632 | Cystic Fibrosis | sputum | Spain: Santander | 379 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 16 | GCF_004370025.1 latest |
- | Contig | 5928 (87) | SAMN10478405 | human | cystic fibrosis | sputum | Canada: Chicoutimi | University Laval |
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Pseudomonas aeruginosa 160 - Assembly GCF_004349955.1 | GCF_004349955.1 latest |
- | Contig | 6702 (213) | SAMN10743803 | infection | hospital | Italy: Trento | 175 (paeruginosa) | University of Trento |
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