Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS16600 (mexF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
GCF_000281915.1|latest
Locus Tag
PCHL3084_RS16600
NCBI Old Locus TagPchl3084_3194
Name
mexF
Synonym: Pchl3084_3194
Replicon chromosome
Genomic location 3784729 - 3787908 (+ strand)

Cross-References

RefSeq WP_009044138.1
GI 496334960
NCBI Locus Tag PCHL3084_RS16600
NCBI Old Locus Tag Pchl3084_3194

Product

Feature Type CDS
Coding Frame 1
Product Name
transporter
Synonyms
Evidence for Translation
Charge (pH 7) -8.67
Kyte-Doolittle Hydrophobicity Value 0.315
Molecular Weight (kDa) 115.0
Isoelectric Point (pI) 5.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1338.2 66.86 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PCHL3084_RS16600
Search term: mexF
Search term: transporter

Human Homologs

References

No references are associated with this feature.