Pseudomonas fluorescens Q2-87, PflQ2_5524 (lapD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens Q2-87
GCF_000281895.1|latest
Locus Tag
PflQ2_5524
NCBI Locus TagPFLQ2_RS00895
Name
lapD
Replicon chromosome
Genomic location 6145296 - 6147242 (- strand)

Cross-References

RefSeq WP_003186938.1
GI 489279282
NCBI Locus Tag PFLQ2_RS00895
NCBI Old Locus Tag PflQ2_5524

Product

Feature Type CDS
Coding Frame 1
Product Name
DeoR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -5.45
Kyte-Doolittle Hydrophobicity Value -0.030
Molecular Weight (kDa) 71.8
Isoelectric Point (pI) 6.36

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3PJT LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 Pseudomonas fluorescens 2.5154 X-RAY DIFFRACTION 90.6
3PJU LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 Pseudomonas fluorescens 2.4991 X-RAY DIFFRACTION 90.6

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001350 (454 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PflQ2_5524
Search term: lapD

Human Homologs

References

No references are associated with this feature.