Pseudomonas fluorescens Q2-87, PflQ2_5524 (lapD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCTGGAGCAGCTCAAGGTGGTGAACCTGTTCTTCAACAAGCAGGTGCGCTACGTGGAAGACATCGACCTGTGGCATGAGGTCGACTACTGGGAAACGC CGATCCAGGCCCTGTGGAAGGGCGCCGGCGATTGCGAGGATTACGCCATCGCCAAGTACTTCAGCCTGCGTCATCTCGGGGTCTCCAGTGACAAGCTGCG CATCACCTACGTCAAGGCCCTGCGACAGAACCGTGCGCACATGGTGCTGACCTATTACGCCACGCCCGAGGCGATGCCGCTGGTGCTCGACAGCCTGATC GACGGCATCCAGCCGGCCAGCCAGCGAACCGACCTGCTGCCGGTCTACTCTTTCAACGCCGAAGGGTTGTGGCTGCCGGGTGCCAAGGGCAACAAGAAAG TGGGTGACACCAAGCGCCTGTCCCGGTGGCAGGATGTGTTGAAAAAAATGCAGGCCGAAGGTTTTCCGGTCGAGACGACTAACTAGGAGCGCGCGCTCAG
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| DNA Sequence for Gene |
>PflQ2_5524
|lapD
ATGTCCTTGTTCAAACAGCTGTTGATCGCTATCTGTCTGTTCCTGGTGGTTGCCTTCAGCGGCAGCTTCATGGTCAGCCTGGAGAGTTCGCGGGCCCAGT ACGTCAACCAGTTGCGTTCCCACGCCCAGGACGCGGCCACGGCGCTGGCGCTGTCGCTGACGCCGAACATCGACGACCCGGCGATGGTGGAACTGATGGT CAGTTCGATCTTCGACAGCGGTTACTACGCGAGCATTCGCGTGGTGGACGTGGCCACCGACAAAACCCTCGTCGAGCGCACGGGCACGCCGGACGCGGGC ACCGTGCCGCAATGGTTCGTCAAGCTGATCGGCCTGGAACCGGCCGGCGGCGATGCCATCGTCAGTCGCGGTTGGGAGCAGGCAGCGCGGGTGGAGGTGG TCAGCCACCCGATGTTCGCCCTCGCCAAGCTGTGGCAGAGCGCATTGGGCAGCCTGGGCTGGTTGCTGCTGTGCGGCGCCGTGAGCGCGGTGCTGGGGGC CTTGCTGCTGCGTCGCCAGCTCAAGCCGCTGGACTACATGGTGCATCAGTCCCACGCCATCGCCCGACGCGAGTTCCTCAGCCTGCCGGAACTGCCGCGC ACCCCGGAACTGCGCCGTGTGGTGCAGGCGATGAACCAGATGGTCGAAAAGCTCAAGGCATTGTTCCAGGAGCAGGCCGAGCGCAGCGAGAAGCTGCGGG CCGAGTCCTACCAGGACAACCTCACGGGCCTGGCCAACCGACGCTATTTCGAGATGCAACTCAATGCCCGGGTGAGCAACACGGAGCAGGCCAGTTCCGG TTATCTGCTGTTGCTGCGGGTCAAGGACCTGGCCGGCCTGAACCAGCGGTTGGGCGGCCAGCGGACCGATCAATTGCTCAAAGCGGTCGGCGAGCAATTG CTGCGTGAAAGTGCCCGATACCCCGAAACCCAGAATCTGGTGACGCGCATCCGTGGCGGCGAGTTCGCCGTACTGGCGCCAGGCCTGGTGCGCGAGGAAG CGCTGCAGCTGGCGCAGAACCTTGAAAGCGCGTTGGCGAGCCTGCACGCCACGGGCGCAACCGACGTGGCCTCGGTGGCTTCCATCGGACTGGCACCGTT CGTTCATGGCGACTCGCCGCAATCGGTGCTCCAGCTTGCCGACCAGGCCCTGGCCCAGGCCGAAAGCCAGGGGGAGCCAAGCTGGGCCTGCCTGGACCAT GCCGCAGTGTCCAGTTTTGGCGATGATCACCATGCCTGGCACACGCTGCTCGACCAGGCCTTGAGTCATCAGCGATTTGAGCTGTACTTCCAACCGGTGG TGGCCGCCCAGGACACCCAAGTGGTGCTGCACTACAAGGTTCTGTCGCGGCTGCTGGACGATCAGGGCCAGACCATTCCCGCCGGCCGCTTCCTGCCCTG GCTGGAGCGCTTCGGCTGGACTGCGCGCCTGGACCGCTTGATGCTTGAACAGGTGCTCAAGCAAATGGTCGGGCACGACCAATCCCTCGCGCTCAACCTG TCCTCGGCGACCTTGGCCGATCCGCAGGCGCTGAACAAAATCTTCGAAATCCTGCGTGCTCATTCCAACCTTGGGCCGCGCCTGACCTTGGAAATTGGCG AGGAACAACTGCCGGAGCAAGCGGTTTTGGAGCAGTTGACCCGTCGTCTGCGCGAGCTTGGATTCTCCTTGAGCCTGCAGCGCTTTGGTGGGCGTTTCAG CATGATCGGCAACTTGTCTCGGCTGGGGCTGGCCTATTTGAAAATTGATGGCAGTTACATCCGGGCCATTGATCAGGAAAGCGATAAGCGTTTGTTTATC GAGGCGATCCAGCGTGCTGCTCACAGTATTGACCTGCCTTTGATTGCTGAGCGGGTGGAGACTGAGGGGGAGTTGGCGGTGATTCGGGAGATGGGGTTGT TTGGGGTGCAGGGGCAGTTGGTTGGGGAGCCTAGGCGTTGGAGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTGTTGACGAGGCGGCCTGGTAGCCGGCCTGGATGTTGTTGACCGAGTACATATCCGTTCTTTTCGTAACGGCGACTTATGGTTCCGCCCTTACGGC GGCTCACTTTTGAGAAGCGCAAAAGTAAGCAACGCTTTATGCCCCACCACTCGGCACCTCGCCTAGGCTCGGTGTGCCCTCACTCCGGCATTGCTCCGTG GGCCCGCTGCGAAGGGCCATCCATGGCCCAGCGCAGCTATCCCGGCATCCATGCCGGGATGCCCACTGCGCAATGCCTGCGTTCGGCCAGCGTGGTTAAC GGGGCGCCGAGATCAACGTCCACGGCGAGGCGGCCTTATAGCCGACCTGGCTCTTGATGGGGACCGCGTTTCCCTGTGGGAGCGGGCTTGCTCGCGAAGA CGGCGGTACATTCAGCATTGATGCAAGCAGACCCACCGCTATCGCGAGCAAGCTCGGCTCCCACAGTAATCGGCGGTGGACACTGATCTTGTAAACGACC
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| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRAQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYASIRVVDVATDKTLVERTGTPDAG TVPQWFVKLIGLEPAGGDAIVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSAVLGALLLRRQLKPLDYMVHQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRAESYQDNLTGLANRRYFEMQLNARVSNTEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLKAVGEQL LRESARYPETQNLVTRIRGGEFAVLAPGLVREEALQLAQNLESALASLHATGATDVASVASIGLAPFVHGDSPQSVLQLADQALAQAESQGEPSWACLDH AAVSSFGDDHHAWHTLLDQALSHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDDQGQTIPAGRFLPWLERFGWTARLDRLMLEQVLKQMVGHDQSLALNL SSATLADPQALNKIFEILRAHSNLGPRLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFI EAIQRAAHSIDLPLIAERVETEGELAVIREMGLFGVQGQLVGEPRRWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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