Pseudomonas sp. CF149, CF149_15427

Gene Feature Overview

Strain	Pseudomonas sp. CF149 GCF_000416155.1|latest
Locus Tag	CF149_15427
NCBI Locus Tag	CF149_RS15190
Name
Replicon	soap_scaffs_149.Contig31
Genomic location	216693 - 219872 (+ strand)

Cross-References

RefSeq	WP_019827266.1
GI	518665555
INSDC	EPJ92972.1
NCBI Locus Tag	CF149_RS15190
NCBI Old Locus Tag	CF149_15427
UniParc	UPI0003580032
UniProtKB Acc	S6HVW8
UniProtKB ID	S6HVW8_9PSED
UniRef100	UniRef100_S6HVW8
UniRef50	UniRef50_Q880Q4
UniRef90	UniRef90_Q4KBN7

Product

Feature Type	CDS
Coding Frame	1
Product Name	multidrug efflux RND transporter MexF
Synonyms
Evidence for Translation
Charge (pH 7)	-9.67
Kyte-Doolittle Hydrophobicity Value	0.301
Molecular Weight (kDa)	115.1
Isoelectric Point (pI)	5.52

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	1338.9	66.25	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: CF149_15427 Search term: multidrug efflux RND transporter MexF

Human Homologs

References