Pseudomonas sp. CF149, CF149_15427

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CF149 soap_scaffs_149.Contig31, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGAACTTCGTCGACAACCAGGTCAATCCCAAGACCGGCACCATCCGTGGTCGCGCCGTGTTCGACAACACCGACGGCAGCTTCACACCGGGCCTGTATGC CCGCTTGAAACTGGTTGGCAGCGGCACCTACTCCGCCGTGCTGATCAATGACGAAGCGGTGGGCACCGACCTGGGCAAAAAGTTCGTGCTGGTGATGGAT GCCGACAACAAATCGGCGTACCGCGCTGTAGATCTTGGTCCGAAAATCGAAGGCCTGCGCATCGTTCGCAGCGGCCTGAACAAGGACGACACCATCATCG TCAAAGGCTTGCAGAAAGTCCGCCCCGGCTCACCGGTGACGCCTGAAGTGATCCCGATGGCCAACGAACAGACCCTCGCCGCACTGGCACAACAACGACA AGCCCTGGAAGCCAGCAACCTGCCACCTGCCAAGCCCGCCACTGGCGCGCCGAAGCTGGCCAGCGTCGCGACTCCTCGCGGTTAAGGGACGAAAACTCCG
DNA Sequence for Gene
>CF149_15427
ATGAATTTTTCCCAGTTCTTCATCCAGCGGCCGATTTTCGCCGCTGTGCTCTCACTGTTGATCCTGATTGCGGGCGGCATTTCGCTGTTCCAATTACCTA TCAGTGAATACCCAGAAGTCGTTCCGCCTACCGTCGTAGTGCGCGCCAGCTTCCCGGGTGCCAACCCCAAAGTGATCGGCGAAACTGTCGCCGCGCCGTT GGAACAAGCCATTACCGGCGTCGAAAACATGTTGTACATGTCTTCGCAGTCCACCGCTGACGGCAAAATCACCCTGACCATCACCTTTGCCCTGGGTACT GACCTGGACAACGCTCAGGTACAGGTGCAAAACCGTGTCACCCGGACCCAGCCCAAGCTGCCCGAGGAAGTGACGCGCATCGGTATCACGGTGGACAAGG CTTCGCCCGACCTGACAATGGTTGTGCACTTGACCTCACCGGACCAGCGCTACGACATGCTGTACCTGTCCAACTACGCCATCCTTAACATTAAGGATGA ACTGGCACGGCTGAACGGCATCGGCGATGTGCAGCTGTTCGGCATGGGCGACTACTCGTTGCGGGTGTGGCTCGATCCAAACAAAACCGCCTCACGTAAC CTGACCGCGACCGATGTGGTCACCGCCATCCGTGAGCAAAACCGCCAGGTTGCGGCCGGTGCACTGGGCGCTCCGCCTGCGCCGAATGCCACCAGCTTCC AGCTGTCGGTTAACACCCAGGGCCGTCTGGTCAGTGAAGAAGAGTTCGAGAACATCATTATCCGCTCCGGCGAAGATGGTCAGATCACTCGCCTCAAAGA CATCGCCCGGGTGGAACTGGGTTCCAGCCAATACGCTTTGCGTTCCTTGCTGAACAACCAGCCGGCGGTGGCGATACCGATCTTCCAGCGCCCCGGCTCA AATGCGATCCAGATCTCCAATGACGTTCGCGCCAAAATGGCCGAACTGAAACAGAACTTCCCCGAAGGCATGGACTTCGACATCGTGTATGACCCGACAA TCTTCGTTCGTGGTTCGATCGAAGCGGTAGTCCATACCCTGTTTGAAGCACTGATTCTGGTAGTACTGGTTGTAATCCTGTTCCTGCAAACTTGGCGCGC CTCGATTATTCCGCTGGTGGCCGTGCCCGTATCGCTGATCGGTACGTTTGCCGTCATGCATATGTTCGGCTTTTCGCTCAACGCCCTTTCGCTGTTCGGG CTGGTGCTGGCCATCGGTATCGTGGTCGACGATGCCATTGTGGTAGTGGAGAACGTCGAGCGAAATATCGAACTGGGACTCAACCCCGTGGACGCTACCA AGCGTGCCATGCGTGAGGTGACCGGTCCAATCATCGCCACCGCACTGGTACTGTGCGCGGTGTTTGTCCCGGCCGCGTTTATCTCGGGTCTGACCGGACA GTTCTACAAGCAGTTCGCCCTGACCATCGCGATTTCCACCGTGATCTCGGCTTTCAACTCGCTGACCTTGTCCCCTGCCCTGGCCGCTGTATTGCTCAAA GGCCATAACGCGCCAAAAGACCGCTTCACCCGCCTGCTCGACCGTCTGTTTGGAGGCTGGCTGTTCGGCCCGTTCAACCGCTTCTTCGTCAAGGCCAGCA ATGGCTACGTGGGCACCGTGCGCCGGATCATTCGTGGCAGCGGAATCGCGATGCTGGTGTATGCAGGTTTGATGGCGCTGACTTGGGCCGGTTTTGCCCA CACCCCGACCGGCTTTGTACCGCCGCAAGACAAGCAATACCTGGTGGCCTTCGCTCAACTGCCTGACGCCGCGAGCCTGGACCGCAGCGAAGAGGTGATC AAGCGTATGTCGGAGCTGGCCCTCAAGCAGCCAGGCGTTGCCAACTCGATCGCCTTCCCCGGCCTGTCGATCAATGGTTTCACCAACAGCCCGAACAGCG GCATCGTGTTTGTCGCGCTCAAGGACTTCGATCAACGCAAGGACCCAAGCCAGTCAGCCGCAGCCATTGCCGCCACGCTCAATGCTGAGTTCGCGGACAT ACAGGAAGCCTATATCGCGATCTTCCCGCCACCGCCGGTACAAGGGCTGGGCACCATTGGCGGCTTCCGCCTGCAAGTCGAGGACCGCGCTGGCCTGGGC TATGACGAACTGTACAAAGAAGTGCAGAACGTTATCGCCAAGAGCCATAACGTGCCGGAACTGGCCGGGTTGTTCACCAGCTATCAGGTCAACGTACCCC AAGTCGATGCTGCCATTGACCGCGAAAAAGCCAAGACTCATGGCGTTGCCATCAGCGACATCTTCGACACCCTGCAGATCTATCTGGGCTCGCTGTATGC CAACGATTTCAACCGCTTCGGTCGTACTTATCAGGTCAACGTGCAAGCCGAGCAGCAGTTCCGCCTGGAGCCCGAGCAGATTGGCCAGCTGAAAGTACGC AACAACAAAGGTGAAATGATTCCGCTGGCGACCTTTATCAAGATCAGCGACACCGCAGGTCCTGACCGCGTCATGCACTACAACGGTTTTGTCACCGCTG AAATCAACGGCGCAGCAGCACCGGGCTACAGCTCGGGCCAGGCTGAAGCGGCGATGGAGAAGCTGCTCAAGGAAGAACTGCCTAACGGCATGACCTTCGA ATGGACTGAGCTGACTTATCAGCAAATCCTTTCGGGCAATACCGCTCTGTTCGTGTTCCCGCTCTGCGTGCTGTTGGCGTTCCTGGTACTGGCGGCCCAA TACGAAAGCTGGAGCCTGCCTCTGGCGGTGATCCTGATCGTACCGATGACGCTGCTCTCAGCAATTACCGGGGTAATTCTGTCGGGAGGCGATAACAACA TCTTCACTCAGATCGGATTGATCGTACTGGTGGGGTTAGCCTGCAAGAACGCGATTTTGATTGTGGAGTTTGCCAAGGACAAGCAAGAAGAAGGCATGAG CCCGCTGGATGCGGTACTGGAAGCCTGCCGCCTGCGTCTGCGCCCGATCCTGATGACTTCGTTCGCCTTCATCATGGGTGTGGTGCCTCTGGTGCTCTCC AGCGGCGCCGGTGCAGAAATGCGTCACGCCATGGGTGTAGCGGTGTTCTCCGGGATGCTGGGGGTGACCTTCTTCGGCCTGCTGCTGACGCCAGTGTTCT ATGTCTTGATTCGCCGTTATGTAGAGCGCAGTGAAGCGCGTAAAGCGGCCAAGCACCTCAAGTTGGAGTCGCAACAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGTGAACGTTTTTCTGCCGAGCCTGTTGGTGCTGGCCTTGAGCGCTTGCGCCGTAGGCCCGGACTACAAGACCCCAGCCACAGAACCGGCCCATATCAG TGCAGATAACCTGAAGGGCTTTGACCGGGCGCATTTTGAAGGGATCTGGTGGCAGCAGTTTGATGACCCGACCCTCAACCAGCTGGTGACTCAGTCACTG GCCGGCAACCGCGAGCTGCGCGTGGCCTTTGCCCGACTGCGTGCAGCCCGGGCGATTCGCGATGACGTCAGCAACGACATCATGCCGACGATCACCAGCC GTGCCAGCAGCGATGTCGGCAAGGGACAGATCCCGGGTACGACCGAGAAGCGTGTCAACAGTGAACGCTACGACCTGGGCCTGGACATGGCCTGGGAAGT CGATCTGTTTGGCCGTATCCAGCGAGAACTGGAGGCCAGCGACGCCGACGAGCAAGTGGCTGCAGCGGATCTGTACCAGCTGCAAGTGACCATGATTGCC
Amino Acid Sequence
>multidrug efflux RND transporter MexF
MNFSQFFIQRPIFAAVLSLLILIAGGISLFQLPISEYPEVVPPTVVVRASFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAILNIKDELARLNGIGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATSFQLSVNTQGRLVSEEEFENIIIRSGEDGQITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNDVRAKMAELKQNFPEGMDFDIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLNPVDATKRAMREVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK GHNAPKDRFTRLLDRLFGGWLFGPFNRFFVKASNGYVGTVRRIIRGSGIAMLVYAGLMALTWAGFAHTPTGFVPPQDKQYLVAFAQLPDAASLDRSEEVI KRMSELALKQPGVANSIAFPGLSINGFTNSPNSGIVFVALKDFDQRKDPSQSAAAIAATLNAEFADIQEAYIAIFPPPPVQGLGTIGGFRLQVEDRAGLG YDELYKEVQNVIAKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPEQIGQLKVR NNKGEMIPLATFIKISDTAGPDRVMHYNGFVTAEINGAAAPGYSSGQAEAAMEKLLKEELPNGMTFEWTELTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRRYVERSEARKAAKHLKLESQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site