Pseudomonas putida S610, EDP1_1462 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida S610
GCF_000497385.1|latest |
| Locus Tag |
EDP1_1462
|
| NCBI Locus Tag | EDP1_RS17160 |
| Name |
ligD
|
| Replicon | EDP1.NODE_1912 |
| Genomic location | 186206 - 188710 (+ strand) |
Cross-References
| RefSeq | WP_023535590.1 |
| GI | 558880516 |
| NCBI Locus Tag | EDP1_RS17160 |
| NCBI Old Locus Tag | EDP1_1462 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
DNA ligase D
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 13.42 |
| Kyte-Doolittle Hydrophobicity Value | -0.504 |
| Molecular Weight (kDa) | 93.0 |
| Isoelectric Point (pI) | 9.09 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003336 (490 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: EDP1_1462
Search term: ligD
Search term: DNA ligase D
|
Human Homologs
References
No references are associated with this feature.