| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas putida S610 |
| Species | Pseudomonas putida |
| Strain | S610 |
| Description/Title | Sample from Pseudomonas putida S610 |
| Annotated Genes | 4187 |
| Partial Genes |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA: TX, College Station |
| Isolation Source | surface-sterilized wheat seeds |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 2013 |
| Database | Scheme | Sequence Type | Alleles | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pputida | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | |||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 69 |
| Contig N50 | 146424 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02470268 |
| NCBI Taxonomy ID | 1399145 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4181 |
| CDS | 4120 |
| tRNA | 51 |
| rRNA | 10 |
| pseudo | 6 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1849 |
| Cytoplasmic Membrane | 945 |
| Periplasmic | 129 |
| Outer Membrane | 102 |
| Extracellular | 32 |
| Unknown | 970 |
| Unknown (This protein may have multiple localization sites) | 93 |
| Flagellar | 17 |
| Fimbrial | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |