Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0108820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_000688275.1
GCF_000688275.1|latest
Locus Tag
Q378_RS0108820
Name
Replicon scaffold00006.6_C
Genomic location 155197 - 158376 (+ strand)

Cross-References

RefSeq WP_016394899.1
GI 511761700
NCBI Locus Tag Q378_RS0108820

Product

Feature Type CDS
Coding Frame 1
Product Name
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Synonyms
Evidence for Translation
Charge (pH 7) -8.43
Kyte-Doolittle Hydrophobicity Value 0.324
Molecular Weight (kDa) 114.7
Isoelectric Point (pI) 5.76

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1345.1 67.4 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Q378_RS0108820

Human Homologs

References

No references are associated with this feature.