Pseudomonas viridiflava LMCA8, RT94_RS26260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas viridiflava LMCA8
GCF_000834695.1|latest |
| Locus Tag |
RT94_RS26260
|
| Name |
Synonym: RT94_26245 |
| Replicon | contig_67 |
| Genomic location | 57746 - 60067 (+ strand) |
Cross-References
| RefSeq | WP_043306735.1 |
| GI | 759588138 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
transcription accessory protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -4.68 |
| Kyte-Doolittle Hydrophobicity Value | -0.287 |
| Molecular Weight (kDa) | 84.6 |
| Isoelectric Point (pI) | 6.42 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004785 (532 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: RT94_RS26260
Search term: transcription accessory protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
E-value:
8.2e-102
Percent Identity:
33.3
|
References
No references are associated with this feature.