Pseudomonas viridiflava LMCA8, RT94_RS26260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_67, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCCCCAGGCAGCATCAAGTCCAGAACCACAAGGTTGAAAACCTCGCGGGACAACAGTCGGTCCATTTGCTCCACGTTCGCCACGGCGCGGGCACGATAG CCCTTGCTGGTGAAGAAACGCTCCAGGAGGCTGCTCAGCCCGGGATCGTCATCGACGATCAGGATTTTTTCGCCTTCAGCATTTTGTGCGGTGCTGCTCA TCGGATGCTCCTTTGATCTCGGGGCGCATTATGGCGTAGCTGCGGTGATGCGCACCGTGTGCATTGTTAGCAGATTTTACTGGGGGCCACACTGAAGCGT TCTTAACCGGAGGCAAAAAGGTCGCGCTCGTCGGCCGATCCCCTAATCCGGCGTCGCCGGGTATAATGCGCCGCCCTCAAAGTCAGGCAACACCAGACTT ATGGCAGTTCGCCAGTCGTGCAAATAAACCTCGACGCGCCAGGCGCTGGCAAGGCAAACCGTAAAAGCCCAGTTTTTTGCTCACAACTCCAGGTGGTCTT
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| DNA Sequence for Gene |
>RT94_RS26260
ATGGACAGCATCAACAGCCGCATCGCCGAAGAACTCGGCGTACGCCCACAACAGGTCGCAGCGGCCGTAGCACTACTGGATGAAGGCTCGACAGTGCCCT TCATTTCCCGCTACCGCAAGGAAGTCACCGGCAGCCTCGATGACACGCAGCTGCGTCATCTGGAAGAGCGCCTGCGCTACCTGCGCGAGCTGGACGACCG GCGTGTCAGCATCCTTGCAAGCATCGAAGAGCAGGGCAAACTGACCCCGGAACTGGCCCGCGACATCAAGCTGGCCGACACCAAGACCCGCCTTGAAGAC TTGTACCTGCCGTACAAGCAGAAACGCCGCACCAAGGGCCAGATCGCCCTCGAAGCCGGTCTGGGCGAGCTGGCCGATGGCCTGTTCAACGACCCGAGCC TGACACCCGAGACCGAAGCCGCCCGCTTCGTCGACGCCGAAAAAGGCGTAGCCGATATAAAAGCCGCGCTGGAAGGTGCCAAATACATCCTGATGGAGCG CTTCGCTGAAGACGCGTCCCTGCTCGATAAACTGCGCGGTTTCCTGAAACAGGAAGCCGTGATCAGCGCGCGAGTGGTACCGGGCAAGGAAGAAGAAGGC GCCAAGTTCCGCGACTACTTCGAACACGACGAACCACTCAAAAGCATGCCGTCGCACCGCGCCCTGGCGATTTTCCGTGGCCGCAACGAAGGCTTTCTCA GTTCCGCACTGAAAGTCGGCGAAGAGCTGCCGGGCACCATGCACCCGTGCGAGCTGATGATCGGCGAACGTTTCGGCATCCAGAACCAGAGCCGCCCTGC CGACAAGTGGCTGGCTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTCTACAGCCACCTGGAAACCGATCTGCTGGGCGAGTTGCGCGACGGCGCCGAG ACCGAAGCGATCAACGTGTTCGCGCATAACCTGCACGACCTGCTGCTGGCCGCACCGGCCGGTCAGCGCGCCACGCTGGGCCTCGATCCTGGCCTGCGGA CCGGTTGCAAGGTTGCGGTGGTAGACGCCACCGGCAAGCTGCTCGACTACGCCACCGTTTACCCGCATGTGCCCAAGAACCAATGGGACCAGACCATCGC CGTGCTGGCAGCCCTGTGCGCCAAGCATTCGGTCGATCTGATCGCCATCGGCAACGGCACTGCCAGCCGCGAAACCGACAAACTGGCGGCCGACCTGATC AAAAAATACCCAGGTCTGAAAATGACCAAGGTCATGGTCTCCGAAGCCGGTGCATCCGTTTATTCGGCATCGGAGCTGGCGGCCAAGGAATTCCCGGACC TGGACGTCTCGATTCGTGGCGCAGTGTCCATTGCCCGTCGCCTGCAGGATCCGCTGGCTGAGCTGGTGAAAATCGATCCGAAATCCATCGGCGTCGGTCA GTACCAGCATGACGTTTCTCAGCTGAAACTGGCACGCGGCCTGGATGCGGTGGTGGAAGACTGCGTGAACGCCGTGGGCGTGGACGTGAATACCGCCTCC GTCGCCCTGCTGGCGCGCATTTCCGGCCTGAACACGACGCTGGCGCAGAACATCGTTGCTCACCGCGACGAGAACGGCGCGTTCAAAACCCGCGCGGCAC TCAAGAAGGTGGCTCGTCTCGGCGAGAAGACGTTCGAACAGGCCGCAGGCTTCCTGCGCGTCATGAGCGGCGACAACCCGCTGGATTCCTCGGCCGTTCA CCCGGAAGCCTACCCGCTGGTGCAGCGCATCGCGGCGGAAACCGACCGTGATATCCGTTCGCTGATCGGCGATGCCAGCTTCCTGAAGCGTCTGGACCCG AAGAAATTCACCGACGAAACCTTCGGTCTGCCGACCGTGACCGACATTCTGCAGGAGCTCGAAAAGCCGGGTCGCGACCCACGCCCCGAGTTCAAGACTG CCGAGTTCCAGGACGGCGTCGAAGACCTCAAGGACCTGCAACTGGGCATGATCCTCGAAGGCGTGGTCACCAACGTCACCAACTTCGGTGCCTTCGTCGA TATCGGCGTGCATCAGGACGGTCTGGTGCACATCTCTGCGCTGTCGGAGAAGTTCATCAAGGACCCGCGTGAAGCGGTCAAGGCCGGCGACGTGGTGAAA GTGAAGGTCATGGAAGTCGACATCCCGCGCAAACGCGTCGGCCTGTCTATGCGCATGAGCGACACGCCGGGCGAGAAAATCGACGGTGCCCGTGGCGCAC GTCCAGGCTCGTCGCCGCGCCAGCAGAACAGCGCGCCACGCAAGGAAACCACCACCGCTGCGCCCGTCAACAACGCCATGGCCTCGCTGTTCGCCAACGC CAAGCAGTTGAAGAAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGATATTCCTGAAGACCTGACCCACAGCGCCTTTTTCAAGATGCTGGGCTGTGAGCTGCGGCGCCTGGATGAAAGTGTCGCCGAAGTTGCACTGCCGCT GGAGGCGCACCTGCGCAATCGCGGCAATGTGATGCACGGCGGGGCAATCTTCAGCCTGGTCGACATCAGCATGGGGCTGGCCTGTTCCAGCTCCCACGGC TTCGATCAGCGCAGCGTGACCATCGAATGCAAGATCAACTACGTGCGCGGTGTGTCCGAAGGCGAGGTGCTGTGCATCGCCAAGGTGTTGCATGCCGGAC GTCGCACGCTGGTTGTGGAGGCAGAAGTGGTTCAGGGCGACAAGCTCGTGGCCAAGGCTCAAGGCACGTTCGCCGTCATCTAGACTTCAATGAACACGGA ACGAACGTGATCGCTGAGAACGGAATCTAGCTGTAGGCGACCGATTTGGGTTAATTTCGGCACCATTAGCGTGGTGCCGAGTCCATTTGGTGGTACGACG
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| Amino Acid Sequence |
>transcription accessory protein
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYLRELDDRRVSILASIEEQGKLTPELARDIKLADTKTRLED LYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLTPETEAARFVDAEKGVADIKAALEGAKYILMERFAEDASLLDKLRGFLKQEAVISARVVPGKEEEG AKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVGEELPGTMHPCELMIGERFGIQNQSRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAE TEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKNQWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLI KKYPGLKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTAS VALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVARLGEKTFEQAAGFLRVMSGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVK VKVMEVDIPRKRVGLSMRMSDTPGEKIDGARGARPGSSPRQQNSAPRKETTTAAPVNNAMASLFANAKQLKKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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