Pseudomonas rhizosphaerae DSM 16299, LT40_RS02130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas rhizosphaerae DSM 16299
GCF_000761155.1|latest
Locus Tag
LT40_RS02130
Name
Synonym: LT40_02160
Replicon chromosome
Genomic location 461731 - 463341 (- strand)

Cross-References

RefSeq WP_043185918.1
GI 759464592

Product

Feature Type CDS
Coding Frame 1
Product Name
microcin ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) 8.53
Kyte-Doolittle Hydrophobicity Value -0.049
Molecular Weight (kDa) 59.0
Isoelectric Point (pI) 9.28

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003590 (535 members)
Putative Inparalogs 1 predicted inparalogs
peptide ABC transporter ATP-binding protein (LT40_RS13095) 52.9% identity

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: LT40_RS02130

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 5.6e-17
Percent Identity: 32.0
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 5.6e-17
Percent Identity: 32.0
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 5.6e-17
Percent Identity: 32.0

References

No references are associated with this feature.