Pseudomonas rhizosphaerae DSM 16299, LT40_RS02130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015833 peptide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00005
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG prh02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:000016 Oligopeptide ABC transporter ATP-binding component - - 3 273 2.6E-112
PANTHER PTHR43776 TRANSPORT ATP-BINDING PROTEIN - - 272 528 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 274 533 3.6E-82
Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 237 269 1.8E-5
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 35 235 6.0E-16
CDD cd03257 ABC_NikE_OppD_transporters - - 275 507 6.62818E-107
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 311 502 6.0E-17
FunFam G3DSA:3.40.50.300:FF:000016 Oligopeptide ABC transporter ATP-binding component - - 274 534 7.8E-103
CDD cd03257 ABC_NikE_OppD_transporters - - 6 240 1.53285E-100
Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 504 528 1.7E-4
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 27 185 7.7E-28
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 303 453 2.9E-30
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 275 524 4.28E-66
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 6 256 4.28E-67
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 273 2.5E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.